• Home
• Research
• Resources
• Publications
• About
• People
• Events
• Jobs
• News
• Contact

Cow genome map

           
Conread name:
           
rthg25_c11.y1
        

               
Conread position:
               
1-171
               

               
Cow position:
               
chr6:21175591-21175416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
1-410
               

               
Cow position:
               
chr6:19446512-19446093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 186
               

               
Conread position:
               
1-477
               

               
Cow position:
               
chr6:34549633-34549182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
274, 50
               

               
Conread position:
               
2-271
               

               
Cow position:
               
chr6:67451117-67451389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
92, 22
               

               
Conread position:
               
2-299
               

               
Cow position:
               
chr6:23401739-23402038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
81, 173
               

               
Conread position:
               
2-362
               

               
Cow position:
               
chr6:43134685-43135067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
69, 40
               

               
Conread position:
               
3-209
               

               
Cow position:
               
chr6:45920965-45921173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
3-415
               

               
Cow position:
               
chr6:65264295-65264707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
24, 80
               

               
Conread position:
               
3-464
               

               
Cow position:
               
chr6:9008371-9008832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
238, 86
               

               
Conread position:
               
3-467
               

               
Cow position:
               
chr6:67187933-67187467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 8
               

               
Conread position:
               
5-213
               

               
Cow position:
               
chr6:47151072-47150857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
14, 202
               

               
Conread position:
               
5-273
               

               
Cow position:
               
chr6:59301537-59301806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
31, 200
               

               
Conread position:
               
5-462
               

               
Cow position:
               
chr6:7801150-7801584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
46, 7
               

               
Conread position:
               
5-469
               

               
Cow position:
               
chr6:60143946-60144403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
86, 201
               

               
Conread position:
               
7-188
               

               
Cow position:
               
chr6:43906429-43906622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
7-193
               

               
Cow position:
               
chr6:18440226-18440421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
17, 44
               

               
Conread position:
               
7-193
               

               
Cow position:
               
chr6:30983765-30983576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
82, 68
               

               
Conread position:
               
7-198
               

               
Cow position:
               
chr6:59297297-59297104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
7-203
               

               
Cow position:
               
chr6:2078565-2078768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
7-207
               

               
Cow position:
               
chr6:15974268-15974477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
11, 183
               

               
Conread position:
               
7-210
               

               
Cow position:
               
chr6:8688599-8688807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
7-210
               

               
Cow position:
               
chr6:24491282-24491068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
90, 35
               

               
Conread position:
               
7-210
               

               
Cow position:
               
chr6:53711655-53711442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
7-210
               

               
Cow position:
               
chr6:55475488-55475295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
7-238
               

               
Cow position:
               
chr6:53546281-53546053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
10, 192
               

               
Conread position:
               
7-250
               

               
Cow position:
               
chr6:50810423-50810667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
88, 23
               

               
Conread position:
               
7-296
               

               
Cow position:
               
chr6:55417281-55417572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
20, 193
               

               
Conread position:
               
7-297
               

               
Cow position:
               
chr6:47246033-47245739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
80, 169
               

               
Conread position:
               
7-299
               

               
Cow position:
               
chr6:58370998-58370706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
80, 158
               

               
Conread position:
               
7-310
               

               
Cow position:
               
chr6:66590323-66590026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
49, 144
               

               
Conread position:
               
7-344
               

               
Cow position:
               
chr6:7119380-7119715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
232, 19
               

               
Conread position:
               
7-347
               

               
Cow position:
               
chr6:59602965-59603315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
97, 19
               

               
Conread position:
               
7-403
               

               
Cow position:
               
chr6:31846993-31847380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
88, 183
               

               
Conread position:
               
7-413
               

               
Cow position:
               
chr6:15446945-15447378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 18
               

               
Conread position:
               
7-415
               

               
Cow position:
               
chr6:12669349-12668935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
84, 123
               

               
Conread position:
               
7-418
               

               
Cow position:
               
chr6:8125582-8125157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
26, 205
               

               
Conread position:
               
7-446
               

               
Cow position:
               
chr6:46558305-46557853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 197
               

               
Conread position:
               
7-461
               

               
Cow position:
               
chr6:6060323-6060775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 43
               

               
Conread position:
               
7-462
               

               
Cow position:
               
chr6:31535322-31535789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
92, 196
               

               
Conread position:
               
7-464
               

               
Cow position:
               
chr6:5095291-5095771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 43
               

               
Conread position:
               
7-469
               

               
Cow position:
               
chr6:21587184-21587647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 15
               

               
Conread position:
               
7-469
               

               
Cow position:
               
chr6:33302646-33302184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 17
               

               
Conread position:
               
7-469
               

               
Cow position:
               
chr6:53932592-53933066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 115
               

               
Conread position:
               
7-469
               

               
Cow position:
               
chr6:54365080-54365549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
109, 16
               

               
Conread position:
               
8-406
               

               
Cow position:
               
chr6:14913984-14914402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
79, 57
               

               
Conread position:
               
8-464
               

               
Cow position:
               
chr6:12338242-12337764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 83
               

               
Conread position:
               
9-284
               

               
Cow position:
               
chr6:8094038-8094320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
89, 17
               

               
Conread position:
               
9-317
               

               
Cow position:
               
chr6:45596298-45596598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
228, 17
               

               
Conread position:
               
10-436
               

               
Cow position:
               
chr6:32268639-32269063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
91, 175
               

               
Conread position:
               
10-473
               

               
Cow position:
               
chr6:54490498-54490971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
230, 85
               

               
Conread position:
               
10-485
               

               
Cow position:
               
chr6:31564104-31564574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
247, 55
               

               
Conread position:
               
11-203
               

               
Cow position:
               
chr6:62079168-62078969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
8, 45
               

               
Conread position:
               
11-208
               

               
Cow position:
               
chr6:22876680-22876889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
11-222
               

               
Cow position:
               
chr6:21183975-21184195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
13, 141
               

               
Conread position:
               
11-237
               

               
Cow position:
               
chr6:66947572-66947799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
13, 177
               

               
Conread position:
               
11-239
               

               
Cow position:
               
chr6:60778016-60777778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
76, 39
               

               
Conread position:
               
11-425
               

               
Cow position:
               
chr6:27888591-27888168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
13, 37
               

               
Conread position:
               
11-453
               

               
Cow position:
               
chr6:57404889-57405334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
147, 92
               

               
Conread position:
               
11-461
               

               
Cow position:
               
chr6:4864327-4864752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
236, 19
               

               
Conread position:
               
11-462
               

               
Cow position:
               
chr6:18988439-18987998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 59
               

               
Conread position:
               
11-469
               

               
Cow position:
               
chr6:40032427-40031968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 74
               

               
Conread position:
               
11-469
               

               
Cow position:
               
chr6:64432180-64431713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 192
               

               
Conread position:
               
12-210
               

               
Cow position:
               
chr6:34569661-34569447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
53, 12
               

               
Conread position:
               
12-284
               

               
Cow position:
               
chr6:30701669-30701414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
188, 73
               

               
Conread position:
               
13-256
               

               
Cow position:
               
chr6:23453888-23453655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
154, 82
               

               
Conread position:
               
13-469
               

               
Cow position:
               
chr6:15243084-15242610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 202
               

               
Conread position:
               
14-174
               

               
Cow position:
               
chr6:34463346-34463512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
14-175
               

               
Cow position:
               
chr6:7291555-7291390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
14-194
               

               
Cow position:
               
chr6:58697384-58697576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
14-209
               

               
Cow position:
               
chr6:15587347-15587554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
14-210
               

               
Cow position:
               
chr6:30825533-30825726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
85, 25
               

               
Conread position:
               
14-210
               

               
Cow position:
               
chr6:53811830-53811621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
14-213
               

               
Cow position:
               
chr6:8468904-8468702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
10, 59
               

               
Conread position:
               
14-213
               

               
Cow position:
               
chr6:55548289-55548497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
11, 61
               

               
Conread position:
               
14-213
               

               
Cow position:
               
chr6:66057998-66057809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
14-245
               

               
Cow position:
               
chr6:1475581-1475356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
187, 0
               

               
Conread position:
               
14-247
               

               
Cow position:
               
chr6:54127577-54127804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
72, 123
               

               
Conread position:
               
14-267
               

               
Cow position:
               
chr6:47884801-47885034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
14-272
               

               
Cow position:
               
chr6:5844924-5845189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
56, 196
               

               
Conread position:
               
14-284
               

               
Cow position:
               
chr6:41655811-41656073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
225, 71
               

               
Conread position:
               
14-294
               

               
Cow position:
               
chr6:36454369-36454634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
12, 56
               

               
Conread position:
               
14-298
               

               
Cow position:
               
chr6:47959049-47958769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
80, 36
               

               
Conread position:
               
14-299
               

               
Cow position:
               
chr6:67282126-67281849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
41, 62
               

               
Conread position:
               
14-379
               

               
Cow position:
               
chr6:48803396-48803777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
56, 139
               

               
Conread position:
               
14-406
               

               
Cow position:
               
chr6:26450543-26450154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
254, 28
               

               
Conread position:
               
14-442
               

               
Cow position:
               
chr6:53024567-53024997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
81, 97
               

               
Conread position:
               
14-445
               

               
Cow position:
               
chr6:10399664-10400097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
85, 169
               

               
Conread position:
               
14-453
               

               
Cow position:
               
chr6:53138694-53139139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 69
               

               
Conread position:
               
14-458
               

               
Cow position:
               
chr6:17997073-17997530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 186
               

               
Conread position:
               
14-460
               

               
Cow position:
               
chr6:8966332-8965873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 81
               

               
Conread position:
               
14-462
               

               
Cow position:
               
chr6:13367526-13367076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 201
               

               
Conread position:
               
14-462
               

               
Cow position:
               
chr6:39358099-39358559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
73, 193
               

               
Conread position:
               
14-463
               

               
Cow position:
               
chr6:611787-611341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 100
               

               
Conread position:
               
14-465
               

               
Cow position:
               
chr6:7539818-7539351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
10, 143
               

               
Conread position:
               
14-468
               

               
Cow position:
               
chr6:44078759-44078297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 170
               

               
Conread position:
               
14-469
               

               
Cow position:
               
chr6:6067469-6067903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 46
               

               
Conread position:
               
14-469
               

               
Cow position:
               
chr6:10613074-10612634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
239, 73
               

               
Conread position:
               
14-469
               

               
Cow position:
               
chr6:28148508-28148025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
51, 137
               

               
Conread position:
               
14-469
               

               
Cow position:
               
chr6:61631364-61631845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
73, 36
               

               
Conread position:
               
14-475
               

               
Cow position:
               
chr6:17090824-17090368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
261, 13
               

               
Conread position:
               
14-488
               

               
Cow position:
               
chr6:15300596-15301063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 160
               

               
Conread position:
               
14-488
               

               
Cow position:
               
chr6:45064791-45065252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
259, 55
               

               
Conread position:
               
15-161
               

               
Cow position:
               
chr6:6547271-6547419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
80, 62
               

               
Conread position:
               
15-197
               

               
Cow position:
               
chr6:47173794-47173975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
72, 82
               

               
Conread position:
               
15-202
               

               
Cow position:
               
chr6:23938294-23938108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
15-212
               

               
Cow position:
               
chr6:37994447-37994247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
73, 180
               

               
Conread position:
               
15-213
               

               
Cow position:
               
chr6:50883436-50883641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
82, 15
               

               
Conread position:
               
15-456
               

               
Cow position:
               
chr6:38771514-38771083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
260, 80
               

               
Conread position:
               
15-461
               

               
Cow position:
               
chr6:20255182-20255604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
251, 74
               

               
Conread position:
               
15-462
               

               
Cow position:
               
chr6:21535283-21534840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 190
               

               
Conread position:
               
15-462
               

               
Cow position:
               
chr6:56850260-56849799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 173
               

               
Conread position:
               
15-464
               

               
Cow position:
               
chr6:32287874-32287399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
80, 110
               

               
Conread position:
               
15-464
               

               
Cow position:
               
chr6:35989995-35990443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 190
               

               
Conread position:
               
15-481
               

               
Cow position:
               
chr6:24468156-24468632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
82, 210
               

               
Conread position:
               
15-487
               

               
Cow position:
               
chr6:4383716-4383251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
75, 15
               

               
Conread position:
               
15-491
               

               
Cow position:
               
chr6:37149425-37148948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 24
               

               
Conread position:
               
16-184
               

               
Cow position:
               
chr6:48278653-48278823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
72, 34
               

               
Conread position:
               
16-191
               

               
Cow position:
               
chr6:54294508-54294337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
16-297
               

               
Cow position:
               
chr6:37463247-37462976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
241, 74
               

               
Conread position:
               
16-299
               

               
Cow position:
               
chr6:16287825-16288100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
40, 81
               

               
Conread position:
               
16-436
               

               
Cow position:
               
chr6:21061649-21062076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
70, 97
               

               
Conread position:
               
16-469
               

               
Cow position:
               
chr6:32126294-32125841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 140
               

               
Conread position:
               
16-469
               

               
Cow position:
               
chr6:47520296-47519825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
58, 189
               

               
Conread position:
               
17-197
               

               
Cow position:
               
chr6:41226606-41226777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
17-348
               

               
Cow position:
               
chr6:17548727-17549090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
54, 201
               

               
Conread position:
               
17-361
               

               
Cow position:
               
chr6:28155932-28156268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
219, 34
               

               
Conread position:
               
17-403
               

               
Cow position:
               
chr6:57545988-57546376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
78, 33
               

               
Conread position:
               
17-415
               

               
Cow position:
               
chr6:47356067-47355652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
58, 102
               

               
Conread position:
               
17-469
               

               
Cow position:
               
chr6:52478170-52478653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
75, 190
               

               
Conread position:
               
17-544
               

               
Cow position:
               
chr6:66434196-66433650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 169
               

               
Conread position:
               
18-158
               

               
Cow position:
               
chr6:47989666-47989517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
18-168
               

               
Cow position:
               
chr6:12099450-12099605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
18-190
               

               
Cow position:
               
chr6:19225152-19225321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
77, 32
               

               
Conread position:
               
18-206
               

               
Cow position:
               
chr6:44543906-44544106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
18-207
               

               
Cow position:
               
chr6:19563239-19563441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
18-207
               

               
Cow position:
               
chr6:36225350-36225151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
18-248
               

               
Cow position:
               
chr6:51529949-51530183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
6, 85
               

               
Conread position:
               
18-299
               

               
Cow position:
               
chr6:37395162-37395456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
15, 188
               

               
Conread position:
               
18-311
               

               
Cow position:
               
chr6:1429874-1429581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
65, 104
               

               
Conread position:
               
18-362
               

               
Cow position:
               
chr6:33206969-33206629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
77, 103
               

               
Conread position:
               
18-425
               

               
Cow position:
               
chr6:47575131-47574723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 52
               

               
Conread position:
               
18-453
               

               
Cow position:
               
chr6:16352119-16352525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
38, 29
               

               
Conread position:
               
18-469
               

               
Cow position:
               
chr6:16700495-16700033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 87
               

               
Conread position:
               
18-475
               

               
Cow position:
               
chr6:15937611-15938081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 198
               

               
Conread position:
               
19-193
               

               
Cow position:
               
chr6:34076402-34076218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
19-197
               

               
Cow position:
               
chr6:50504695-50504509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
19-206
               

               
Cow position:
               
chr6:15172795-15172607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
78, 65
               

               
Conread position:
               
19-214
               

               
Cow position:
               
chr6:1941595-1941796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
72, 164
               

               
Conread position:
               
19-217
               

               
Cow position:
               
chr6:35984895-35985106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
19-317
               

               
Cow position:
               
chr6:62437656-62437346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
68, 184
               

               
Conread position:
               
19-356
               

               
Cow position:
               
chr6:54854489-54854132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
66, 133
               

               
Conread position:
               
19-372
               

               
Cow position:
               
chr6:53841264-53841632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
52, 67
               

               
Conread position:
               
19-447
               

               
Cow position:
               
chr6:63251682-63252126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
67, 128
               

               
Conread position:
               
20-213
               

               
Cow position:
               
chr6:50771123-50771322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
74, 22
               

               
Conread position:
               
20-244
               

               
Cow position:
               
chr6:57079664-57079434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
75, 190
               

               
Conread position:
               
20-343
               

               
Cow position:
               
chr6:36645612-36645284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
219, 65
               

               
Conread position:
               
20-361
               

               
Cow position:
               
chr6:38610212-38609846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
71, 193
               

               
Conread position:
               
21-483
               

               
Cow position:
               
chr6:38218878-38218433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
252, 18
               

               
Conread position:
               
22-379
               

               
Cow position:
               
chr6:60118378-60118010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
75, 105
               

               
Conread position:
               
22-414
               

               
Cow position:
               
chr6:33450743-33451103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
68, 5
               

               
Conread position:
               
22-456
               

               
Cow position:
               
chr6:65903390-65903829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 115
               

               
Conread position:
               
22-462
               

               
Cow position:
               
chr6:38853420-38853877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 188
               

               
Conread position:
               
22-469
               

               
Cow position:
               
chr6:24031599-24031149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 63
               

               
Conread position:
               
23-178
               

               
Cow position:
               
chr6:59265478-59265629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
23-194
               

               
Cow position:
               
chr6:24903340-24903523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
23-276
               

               
Cow position:
               
chr6:57089439-57089175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
68, 189
               

               
Conread position:
               
23-351
               

               
Cow position:
               
chr6:46173023-46173370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
64, 181
               

               
Conread position:
               
23-357
               

               
Cow position:
               
chr6:5330649-5330306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
72, 107
               

               
Conread position:
               
23-361
               

               
Cow position:
               
chr6:19996850-19996499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
53, 109
               

               
Conread position:
               
23-464
               

               
Cow position:
               
chr6:23532881-23532443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 38
               

               
Conread position:
               
23-487
               

               
Cow position:
               
chr6:19402080-19401619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 123
               

               
Conread position:
               
24-272
               

               
Cow position:
               
chr6:10039960-10039705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
67, 186
               

               
Conread position:
               
24-462
               

               
Cow position:
               
chr6:34195928-34196367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 66
               

               
Conread position:
               
24-469
               

               
Cow position:
               
chr6:6264886-6264418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 357
               

               
Conread position:
               
24-469
               

               
Cow position:
               
chr6:46466052-46465602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
73, 185
               

               
Conread position:
               
24-469
               

               
Cow position:
               
chr6:49398395-49398842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 79
               

               
Conread position:
               
28-203
               

               
Cow position:
               
chr6:47022789-47022607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
29-210
               

               
Cow position:
               
chr6:15058604-15058416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
29-273
               

               
Cow position:
               
chr6:2585170-2584923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
58, 182
               

               
Conread position:
               
30-299
               

               
Cow position:
               
chr6:44867318-44867588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
44, 185
               

               
Conread position:
               
31-209
               

               
Cow position:
               
chr6:34380589-34380774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
40, 114
               

               
Conread position:
               
31-248
               

               
Cow position:
               
chr6:48379384-48379606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
64, 179
               

               
Conread position:
               
31-469
               

               
Cow position:
               
chr6:21590932-21590491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
24, 33
               

               
Conread position:
               
31-469
               

               
Cow position:
               
chr6:63047803-63047350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 55
               

               
Conread position:
               
34-450
               

               
Cow position:
               
chr6:14658820-14658400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
43, 10
               

               
Conread position:
               
35-210
               

               
Cow position:
               
chr6:61681301-61681117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
35-450
               

               
Cow position:
               
chr6:19696032-19695600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
60, 159
               

               
Conread position:
               
38-203
               

               
Cow position:
               
chr6:9718697-9718867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
38-267
               

               
Cow position:
               
chr6:57287451-57287674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
206, 37
               

               
Conread position:
               
38-399
               

               
Cow position:
               
chr6:60740230-60739859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 162
               

               
Conread position:
               
38-460
               

               
Cow position:
               
chr6:28483237-28482798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 176
               

               
Conread position:
               
42-184
               

               
Cow position:
               
chr6:17412357-17412501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
50-210
               

               
Cow position:
               
chr6:30895782-30895953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
53-257
               

               
Cow position:
               
chr6:10488075-10488270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
56-299
               

               
Cow position:
               
chr6:2623969-2623734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
41, 111
               

               
Conread position:
               
56-398
               

               
Cow position:
               
chr6:67323508-67323161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
39, 208
               

               
Conread position:
               
64-464
               

               
Cow position:
               
chr6:26915512-26915109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
175, 26
               

               
Conread position:
               
70-439
               

               
Cow position:
               
chr6:60057477-60057853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 46
               

               
Conread position:
               
71-215
               

               
Cow position:
               
chr6:29852888-29853030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
79-389
               

               
Cow position:
               
chr6:16316490-16316160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
18, 280
               

               
Conread position:
               
80-469
               

               
Cow position:
               
chr6:11169872-11169482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 108
               

               
Conread position:
               
84-481
               

               
Cow position:
               
chr6:38441339-38440945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 112
               

               
Conread position:
               
85-420
               

               
Cow position:
               
chr6:37783564-37783237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 10
               

               
Conread position:
               
85-464
               

               
Cow position:
               
chr6:35103162-35103548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
14, 115
               

               
Conread position:
               
87-213
               

               
Cow position:
               
chr6:60516786-60516662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
87-357
               

               
Cow position:
               
chr6:582111-582389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
152, 8
               

               
Conread position:
               
87-395
               

               
Cow position:
               
chr6:4691814-4692136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
157, 15
               

               
Conread position:
               
87-442
               

               
Cow position:
               
chr6:59069456-59069827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 137
               

               
Conread position:
               
88-208
               

               
Cow position:
               
chr6:54607012-54606895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
88-222
               

               
Cow position:
               
chr6:35654387-35654522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
88-262
               

               
Cow position:
               
chr6:60451589-60451424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
90-334
               

               
Cow position:
               
chr6:17794605-17794851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
183, 13
               

               
Conread position:
               
90-437
               

               
Cow position:
               
chr6:528124-528472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
180, 109
               

               
Conread position:
               
91-200
               

               
Cow position:
               
chr6:35702185-35702295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
91-201
               

               
Cow position:
               
chr6:49607552-49607441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
91-203
               

               
Cow position:
               
chr6:5400602-5400713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
91-253
               

               
Cow position:
               
chr6:54573418-54573262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
91-263
               

               
Cow position:
               
chr6:67805855-67806027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
7, 101
               

               
Conread position:
               
91-273
               

               
Cow position:
               
chr6:56986491-56986663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
7, 92
               

               
Conread position:
               
91-297
               

               
Cow position:
               
chr6:18144357-18144147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
7, 118
               

               
Conread position:
               
91-370
               

               
Cow position:
               
chr6:60667569-60667290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
150, 48
               

               
Conread position:
               
91-396
               

               
Cow position:
               
chr6:46282844-46283156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
7, 131
               

               
Conread position:
               
91-437
               

               
Cow position:
               
chr6:16191831-16191473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 69
               

               
Conread position:
               
91-456
               

               
Cow position:
               
chr6:67214907-67214529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 11
               

               
Conread position:
               
91-462
               

               
Cow position:
               
chr6:24781402-24781782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
180, 14
               

               
Conread position:
               
91-469
               

               
Cow position:
               
chr6:54867677-54867285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 114
               

               
Conread position:
               
92-273
               

               
Cow position:
               
chr6:22215312-22215486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
26, 97
               

               
Conread position:
               
92-466
               

               
Cow position:
               
chr6:6343588-6343203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 111
               

               
Conread position:
               
93-248
               

               
Cow position:
               
chr6:47841707-47841547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
114, 10
               

               
Conread position:
               
94-455
               

               
Cow position:
               
chr6:67456874-67456491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
145, 116
               

               
Conread position:
               
94-469
               

               
Cow position:
               
chr6:7130724-7131097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
120, 102
               

               
Conread position:
               
95-462
               

               
Cow position:
               
chr6:46865437-46865818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
142, 104
               

               
Conread position:
               
95-463
               

               
Cow position:
               
chr6:53519469-53519842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 120
               

               
Conread position:
               
95-482
               

               
Cow position:
               
chr6:28976885-28977269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 104
               

               
Conread position:
               
97-207
               

               
Cow position:
               
chr6:58076546-58076436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
97-208
               

               
Cow position:
               
chr6:19508035-19508146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
97-213
               

               
Cow position:
               
chr6:37603719-37603602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
83, 114
               

               
Conread position:
               
97-251
               

               
Cow position:
               
chr6:49096301-49096447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
141, 85
               

               
Conread position:
               
97-268
               

               
Cow position:
               
chr6:19131583-19131416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
143, 99
               

               
Conread position:
               
97-273
               

               
Cow position:
               
chr6:2153446-2153616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
97-294
               

               
Cow position:
               
chr6:55535599-55535792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
142, 44
               

               
Conread position:
               
97-399
               

               
Cow position:
               
chr6:50984374-50984068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
178, 16
               

               
Conread position:
               
97-410
               

               
Cow position:
               
chr6:16764493-16764809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
84, 149
               

               
Conread position:
               
97-412
               

               
Cow position:
               
chr6:19013216-19012900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
144, 63
               

               
Conread position:
               
97-434
               

               
Cow position:
               
chr6:30974189-30973849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
174, 25
               

               
Conread position:
               
97-446
               

               
Cow position:
               
chr6:66131457-66131105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
144, 12
               

               
Conread position:
               
97-449
               

               
Cow position:
               
chr6:38641645-38641292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
148, 75
               

               
Conread position:
               
97-455
               

               
Cow position:
               
chr6:37199385-37199757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
142, 27
               

               
Conread position:
               
97-456
               

               
Cow position:
               
chr6:47339203-47339562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 102
               

               
Conread position:
               
97-462
               

               
Cow position:
               
chr6:19681372-19681739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 102
               

               
Conread position:
               
97-466
               

               
Cow position:
               
chr6:42565840-42565463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 21
               

               
Conread position:
               
97-470
               

               
Cow position:
               
chr6:53652193-53651814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
159, 102
               

               
Conread position:
               
98-206
               

               
Cow position:
               
chr6:107273-107381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
98-440
               

               
Cow position:
               
chr6:9750905-9751237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
142, 77
               

               
Conread position:
               
98-468
               

               
Cow position:
               
chr6:40774180-40774573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
122, 300
               

               
Conread position:
               
98-539
               

               
Cow position:
               
chr6:66874501-66874067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 25
               

               
Conread position:
               
100-341
               

               
Cow position:
               
chr6:20196153-20196395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
170, 77
               

               
Conread position:
               
105-458
               

               
Cow position:
               
chr6:60350147-60350514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
172, 126
               

               
Conread position:
               
105-460
               

               
Cow position:
               
chr6:5609302-5609657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
130, 88
               

               
Conread position:
               
106-273
               

               
Cow position:
               
chr6:17527221-17527380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
106-295
               

               
Cow position:
               
chr6:17527445-17527632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
150, 89
               

               
Conread position:
               
106-462
               

               
Cow position:
               
chr6:18048883-18049244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
139, 15
               

               
Conread position:
               
106-462
               

               
Cow position:
               
chr6:31526190-31525830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 103
               

               
Conread position:
               
106-487
               

               
Cow position:
               
chr6:35613273-35613652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 91
               

               
Conread position:
               
109-299
               

               
Cow position:
               
chr6:61142421-61142612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
130, 90
               

               
Conread position:
               
112-469
               

               
Cow position:
               
chr6:1770060-1770421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
140, 87
               

               
Conread position:
               
114-469
               

               
Cow position:
               
chr6:27110733-27110365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
75, 260
               

               
Conread position:
               
116-436
               

               
Cow position:
               
chr6:28318530-28318216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
155, 9
               

               
Conread position:
               
116-542
               

               
Cow position:
               
chr6:30474461-30474022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
83, 7
               

               
Conread position:
               
137-456
               

               
Cow position:
               
chr6:54140910-54140601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 76
               

               
Conread position:
               
140-459
               

               
Cow position:
               
chr6:52248020-52248349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
21, 67
               

               
Conread position:
               
144-469
               

               
Cow position:
               
chr6:53178735-53178414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
93, 26
               

               
Conread position:
               
162-407
               

               
Cow position:
               
chr6:44984421-44984162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
79, 31
               

               
Conread position:
               
182-437
               

               
Cow position:
               
chr6:28148903-28148649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
56, 30
               

               
Conread position:
               
183-452
               

               
Cow position:
               
chr6:47989239-47988981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
85, 29
               

               
Conread position:
               
207-488
               

               
Cow position:
               
chr6:67304854-67304556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 249
               

               
Conread position:
               
207-542
               

               
Cow position:
               
chr6:49685634-49685295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
34, 138
               

               
Conread position:
               
211-469
               

               
Cow position:
               
chr6:16411236-16410970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
37, 95
               

               
Conread position:
               
276-437
               

               
Cow position:
               
chr6:53731483-53731327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
278-461
               

               
Cow position:
               
chr6:47540492-47540308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
290-544
               

               
Cow position:
               
chr6:3118247-3118501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
181, 28
               

               
Conread position:
               
297-437
               

               
Cow position:
               
chr6:21812672-21812536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
315-542
               

               
Cow position:
               
chr6:56860234-56860003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
327-542
               

               
Cow position:
               
chr6:51191730-51191525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
63, 108
               

               
Conread position:
               
372-544
               

               
Cow position:
               
chr6:43788609-43788789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
99, 0
               
Show alignments to all cow chromosomes.