Cow genome map

Conread name: rthg33_p11.y1

Conread position: 265-484
Cow position: chr11:82347373-82347152 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 160
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 66, 17

Conread position: 265-489
Cow position: chr11:44581200-44580965 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 162
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 35, 17

Conread position: 265-499
Cow position: chr11:71331533-71331778 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 169
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 24, 0

Conread position: 319-521
Cow position: chr11:73799610-73799402 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 147
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 21, 0

Conread position: 336-522
Cow position: chr11:14735232-14735044 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 139
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 126, 76

Conread position: 338-481
Cow position: chr11:7720276-7720130 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 129, 90

Conread position: 338-520
Cow position: chr11:32454171-32454359 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 133
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 126, 0

Conread position: 338-520
Cow position: chr11:76371945-76371762 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 138
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 152, 126

Conread position: 338-521
Cow position: chr11:31864727-31864916 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 137
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 121, 0

Conread position: 339-477
Cow position: chr11:7118524-7118666 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 108
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 126, 0

Conread position: 339-480
Cow position: chr11:40327774-40327632 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 110
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 121, 134

Conread position: 339-485
Cow position: chr11:53429911-53429761 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 111
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 120, 0

Conread position: 339-486
Cow position: chr11:44154977-44154826 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 113
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 120, 0

Conread position: 339-489
Cow position: chr11:4268035-4267883 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 111
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 136, 0

Conread position: 339-489
Cow position: chr11:11990099-11990253 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 120, 0

Conread position: 339-489
Cow position: chr11:26549610-26549765 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 120, 0

Conread position: 339-489
Cow position: chr11:32078669-32078515 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 120, 0

Conread position: 339-489
Cow position: chr11:33602519-33602365 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 120, 0

Conread position: 339-489
Cow position: chr11:38833362-38833208 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 114
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 122, 0

Conread position: 339-489
Cow position: chr11:66731267-66731421 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 114
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 120, 0

Conread position: 339-489
Cow position: chr11:72312567-72312721 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 122, 0

Conread position: 339-492
Cow position: chr11:67296897-67296741 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 116
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 120, 136

Conread position: 339-520
Cow position: chr11:30121535-30121349 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 132
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 126, 0

Conread position: 339-520
Cow position: chr11:49172390-49172203 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 133
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 128, 0

Conread position: 339-520
Cow position: chr11:85391713-85391526 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 135
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 120, 0

Conread position: 339-521
Cow position: chr11:15994276-15994459 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 140
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 123, 0

Conread position: 339-521
Cow position: chr11:35253181-35253003 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 134
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 155, 106

Conread position: 339-521
Cow position: chr11:35862517-35862331 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 138
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 126, 0

Conread position: 339-521
Cow position: chr11:37280571-37280384 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 141
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 120, 0

Conread position: 339-521
Cow position: chr11:45106966-45107148 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 130
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 116, 93

Conread position: 339-522
Cow position: chr11:4054187-4054002 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 140
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 126, 172

Conread position: 339-522
Cow position: chr11:7926975-7926788 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 141
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 120, 174

Conread position: 339-522
Cow position: chr11:10092785-10092971 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 141
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 119, 145

Conread position: 339-522
Cow position: chr11:12504735-12504556 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 136
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 120, 40

Conread position: 339-522
Cow position: chr11:21470909-21471092 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 139
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 154, 170

Conread position: 339-522
Cow position: chr11:21897575-21897385 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 137
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 115, 81

Conread position: 339-522
Cow position: chr11:25395283-25395470 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 146
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 38, 90

Conread position: 339-522
Cow position: chr11:34022090-34022275 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 150
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 123, 34

Conread position: 339-522
Cow position: chr11:39805828-39806013 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 136
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 120, 21

Conread position: 339-522
Cow position: chr11:73467304-73467118 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 136
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 123, 106

Conread position: 339-522
Cow position: chr11:87138104-87137919 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 143
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 123, 154

Conread position: 339-523
Cow position: chr11:5982244-5982434 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 147
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 20, 67

Conread position: 339-523
Cow position: chr11:15126928-15127112 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 139
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 120, 147

Conread position: 339-523
Cow position: chr11:15720617-15720428 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 141
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 123, 168

Conread position: 339-523
Cow position: chr11:24292567-24292752 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 133
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 131, 165

Conread position: 339-523
Cow position: chr11:40403643-40403462 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 136
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 126, 54

Conread position: 340-499
Cow position: chr11:31928287-31928448 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 126
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 119, 19

Conread position: 341-522
Cow position: chr11:1487997-1487813 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 136
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 114, 147

Conread position: 341-522
Cow position: chr11:9080432-9080247 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 136
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 124, 172

Conread position: 342-487
Cow position: chr11:9431330-9431480 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 111
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 123, 0

Conread position: 342-491
Cow position: chr11:22934476-22934323 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 120
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 120, 0

Conread position: 342-522
Cow position: chr11:74346519-74346702 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 131
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 117, 84

Conread position: 343-487
Cow position: chr11:12095909-12096057 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 113
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 116, 0

Conread position: 345-489
Cow position: chr11:58138828-58138976 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 114, 0

Conread position: 345-518
Cow position: chr11:2350069-2350248 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 131
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 119, 0

Conread position: 345-520
Cow position: chr11:3495101-3495276 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 128
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 149, 119

Conread position: 345-520
Cow position: chr11:7121847-7121666 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 132
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 119, 0

Conread position: 345-520
Cow position: chr11:25099053-25098872 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 131
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 119, 0

Conread position: 345-520
Cow position: chr11:30105076-30104895 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 132
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 119, 0

Conread position: 345-520
Cow position: chr11:30254346-30254525 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 133
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 116, 0

Conread position: 345-520
Cow position: chr11:39585605-39585424 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 130
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 119, 0

Conread position: 345-520
Cow position: chr11:41422789-41422608 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 131
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 119, 0

Conread position: 345-520
Cow position: chr11:41744677-41744858 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 131
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 119, 0

Conread position: 345-520
Cow position: chr11:44515830-44515651 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 131
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 119, 20

Conread position: 345-520
Cow position: chr11:58947760-58947936 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 124
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 155, 0

Conread position: 345-520
Cow position: chr11:63391359-63391178 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 132
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 119, 0

Conread position: 345-520
Cow position: chr11:75392369-75392550 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 130
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 119, 0

Conread position: 345-520
Cow position: chr11:84966234-84966411 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 129
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 149, 0

Conread position: 345-521
Cow position: chr11:10699630-10699449 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 130
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 119, 0

Conread position: 345-521
Cow position: chr11:15987373-15987550 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 131
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 149, 0

Conread position: 345-521
Cow position: chr11:17105565-17105384 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 127
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 119, 0

Conread position: 345-521
Cow position: chr11:19061958-19061777 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 131
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 119, 169

Conread position: 345-521
Cow position: chr11:19100365-19100186 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 128
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 110, 0

Conread position: 345-521
Cow position: chr11:28124631-28124812 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 131
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 120, 0

Conread position: 345-521
Cow position: chr11:28227661-28227482 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 127
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 130, 0

Conread position: 345-521
Cow position: chr11:30201573-30201392 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 130
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 113, 0

Conread position: 345-521
Cow position: chr11:32478696-32478515 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 130
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 119, 0

Conread position: 345-521
Cow position: chr11:35143202-35143025 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 129
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 149, 0

Conread position: 345-521
Cow position: chr11:47737425-47737248 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 129
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 149, 0

Conread position: 345-521
Cow position: chr11:47973735-47973554 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 135
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 119, 0

Conread position: 345-521
Cow position: chr11:49012944-49012763 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 132
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 121, 0

Conread position: 345-521
Cow position: chr11:52845661-52845836 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 130
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 149, 119

Conread position: 345-521
Cow position: chr11:67446123-67445944 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 130
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 110, 0

Conread position: 345-521
Cow position: chr11:67452771-67452952 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 131
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 119, 0

Conread position: 345-523
Cow position: chr11:10957937-10958117 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 133
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 110, 158

Conread position: 345-523
Cow position: chr11:20732106-20731926 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 132
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 114, 158

Conread position: 346-521
Cow position: chr11:38600817-38600640 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 126
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 126, 68

Conread position: 346-523
Cow position: chr11:26068941-26068763 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 140
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 119, 80

Conread position: 348-521
Cow position: chr11:12951027-12950868 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 134
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 9, 0

Conread position: 349-519
Cow position: chr11:61130498-61130321 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 134
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 16, 0

Conread position: 373-522
Cow position: chr11:27937552-27937706 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 119
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 44, 141

Conread position: 384-520
Cow position: chr11:27659404-27659545 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 107
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 75, 0

Show alignments to all cow chromosomes.