Cow genome map

Conread name: rthg33_p11.y1

Conread position: 265-486
Cow position: chr16:3144760-3144536 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 151
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 44, 21

Conread position: 265-489
Cow position: chr16:3770380-3770145 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 162
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 46, 21

Conread position: 265-520
Cow position: chr16:43895631-43895364 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 180
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 24, 0

Conread position: 327-522
Cow position: chr16:46224856-46224655 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 150
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 13, 188

Conread position: 333-499
Cow position: chr16:16239393-16239222 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 125
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 7, 0

Conread position: 335-489
Cow position: chr16:44128133-44127974 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 120
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 5, 0

Conread position: 336-522
Cow position: chr16:10966500-10966315 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 132
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 154, 41

Conread position: 338-489
Cow position: chr16:2409181-2409029 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 114
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 117, 66

Conread position: 338-520
Cow position: chr16:19672651-19672463 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 140
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 81, 177

Conread position: 338-520
Cow position: chr16:25087321-25087509 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 141
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 121, 0

Conread position: 339-459
Cow position: chr16:28269354-28269234 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 93
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 339-463
Cow position: chr16:39645361-39645488 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 101
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 17, 0

Conread position: 339-486
Cow position: chr16:3149315-3149168 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 107
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 339-486
Cow position: chr16:15980674-15980523 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 113
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 120, 0

Conread position: 339-488
Cow position: chr16:625087-625236 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 115
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 120, 94

Conread position: 339-489
Cow position: chr16:7674747-7674593 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 114
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 128, 0

Conread position: 339-489
Cow position: chr16:11634440-11634287 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 114
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 120, 24

Conread position: 339-489
Cow position: chr16:14663594-14663438 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 122, 0

Conread position: 339-489
Cow position: chr16:23985022-23985176 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 126, 0

Conread position: 339-492
Cow position: chr16:25343688-25343845 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 115
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 120, 0

Conread position: 339-492
Cow position: chr16:46521337-46521181 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 124
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 126, 27

Conread position: 339-499
Cow position: chr16:25455750-25455585 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 120, 0

Conread position: 339-499
Cow position: chr16:27731670-27731505 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 120, 0

Conread position: 339-500
Cow position: chr16:5654892-5655055 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 122
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 123, 27

Conread position: 339-502
Cow position: chr16:47475731-47475898 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 123
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 16, 149

Conread position: 339-516
Cow position: chr16:28435425-28435243 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 133
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 116, 40

Conread position: 339-517
Cow position: chr16:23672324-23672506 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 135
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 123, 172

Conread position: 339-520
Cow position: chr16:194194-194012 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 134
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 70, 62

Conread position: 339-520
Cow position: chr16:3031790-3031603 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 137
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 120, 0

Conread position: 339-520
Cow position: chr16:41033015-41033202 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 134
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 120, 0

Conread position: 339-520
Cow position: chr16:41165047-41164861 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 131
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 120, 0

Conread position: 339-520
Cow position: chr16:45705080-45704893 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 142
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 17, 175

Conread position: 339-521
Cow position: chr16:2237058-2236871 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 136
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 120, 0

Conread position: 339-521
Cow position: chr16:2303840-2304027 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 140
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 120, 0

Conread position: 339-521
Cow position: chr16:5762495-5762681 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 147
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 120, 171

Conread position: 339-521
Cow position: chr16:34532017-34532201 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 136
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 122, 0

Conread position: 339-521
Cow position: chr16:52525943-52526130 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 131
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 121, 0

Conread position: 339-522
Cow position: chr16:2481404-2481219 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 133
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 120, 164

Conread position: 339-522
Cow position: chr16:3331626-3331809 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 136
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 126, 21

Conread position: 339-522
Cow position: chr16:9416974-9416793 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 133
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 155, 101

Conread position: 339-522
Cow position: chr16:15411336-15411153 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 129
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 154, 170

Conread position: 339-522
Cow position: chr16:16268182-16267995 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 150
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 120, 174

Conread position: 339-522
Cow position: chr16:19275843-19276029 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 134
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 126, 49

Conread position: 339-522
Cow position: chr16:20203712-20203899 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 137
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 109, 174

Conread position: 339-522
Cow position: chr16:29035614-29035796 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 137
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 121, 47

Conread position: 339-522
Cow position: chr16:29157370-29157556 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 144
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 120, 41

Conread position: 339-522
Cow position: chr16:34505409-34505596 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 138
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 126, 174

Conread position: 339-522
Cow position: chr16:49220245-49220060 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 131
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 55, 172

Conread position: 339-523
Cow position: chr16:2725510-2725322 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 135
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 82, 166

Conread position: 339-523
Cow position: chr16:37443805-37443621 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 144
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 122, 27

Conread position: 339-523
Cow position: chr16:39034989-39034804 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 133
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 131, 165

Conread position: 339-523
Cow position: chr16:41684580-41684393 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 140
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 120, 12

Conread position: 339-523
Cow position: chr16:49743718-49743533 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 137
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 11, 31

Conread position: 340-487
Cow position: chr16:5876057-5876207 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 114
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 119, 138

Conread position: 340-489
Cow position: chr16:5487483-5487636 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 119
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 119, 0

Conread position: 340-522
Cow position: chr16:42734908-42734729 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 133
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 119, 51

Conread position: 341-489
Cow position: chr16:3348522-3348673 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 114
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 118, 140

Conread position: 341-499
Cow position: chr16:2273777-2273939 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 118
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 124, 19

Conread position: 341-521
Cow position: chr16:51086496-51086681 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 136
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 122, 10

Conread position: 341-521
Cow position: chr16:51402136-51401951 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 140
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 126, 0

Conread position: 341-523
Cow position: chr16:32325569-32325754 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 146
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 124, 165

Conread position: 342-492
Cow position: chr16:838998-839152 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 117, 0

Conread position: 345-482
Cow position: chr16:12536228-12536087 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 107
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 75, 0

Conread position: 345-486
Cow position: chr16:40294452-40294308 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 108
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 114, 70

Conread position: 345-489
Cow position: chr16:26665434-26665582 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 109
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 114, 0

Conread position: 345-489
Cow position: chr16:54323602-54323454 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 111
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 116, 0

Conread position: 345-520
Cow position: chr16:4388454-4388635 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 136
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 114, 0

Conread position: 345-520
Cow position: chr16:5528907-5529088 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 132
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 119, 0

Conread position: 345-520
Cow position: chr16:20277571-20277752 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 131
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 119, 0

Conread position: 345-520
Cow position: chr16:23097473-23097296 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 127
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 144, 0

Conread position: 345-520
Cow position: chr16:23876806-23876631 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 131
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 149, 119

Conread position: 345-520
Cow position: chr16:28168600-28168419 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 129
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 119, 0

Conread position: 345-520
Cow position: chr16:36240874-36241045 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 129
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 148, 119

Conread position: 345-520
Cow position: chr16:41161746-41161571 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 125
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 148, 119

Conread position: 345-520
Cow position: chr16:47787676-47787857 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 131
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 119, 0

Conread position: 345-520
Cow position: chr16:53446053-53445872 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 131
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 119, 0

Conread position: 345-521
Cow position: chr16:3010557-3010734 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 125
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 149, 0

Conread position: 345-521
Cow position: chr16:5526384-5526207 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 127
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 144, 0

Conread position: 345-521
Cow position: chr16:10373964-10373783 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 127
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 119, 0

Conread position: 345-521
Cow position: chr16:11284939-11285116 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 129
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 149, 0

Conread position: 345-521
Cow position: chr16:15811786-15811967 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 131
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 116, 0

Conread position: 345-521
Cow position: chr16:20642227-20642406 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 131
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 116, 83

Conread position: 345-521
Cow position: chr16:22799952-22799771 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 127
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 114, 0

Conread position: 345-521
Cow position: chr16:24621980-24621799 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 127
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 119, 0

Conread position: 345-521
Cow position: chr16:26652337-26652518 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 129
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 119, 0

Conread position: 345-521
Cow position: chr16:27595236-27595417 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 127
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 119, 0

Conread position: 345-521
Cow position: chr16:28194582-28194401 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 132
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 119, 0

Conread position: 345-521
Cow position: chr16:42162466-42162642 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 128
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 149, 131

Conread position: 345-521
Cow position: chr16:47403101-47403282 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 132
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 119, 0

Conread position: 345-522
Cow position: chr16:27711453-27711273 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 138
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 62, 42

Conread position: 346-521
Cow position: chr16:24406635-24406814 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 128
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 118, 72

Conread position: 349-522
Cow position: chr16:50875087-50874914 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 130
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 103, 39

Conread position: 354-499
Cow position: chr16:23562176-23562327 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 114
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 5, 0

Conread position: 366-522
Cow position: chr16:46055786-46055941 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 127, 72

Conread position: 379-520
Cow position: chr16:26653429-26653574 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 111
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 63, 134

Conread position: 381-521
Cow position: chr16:18495991-18495846 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 78, 0

Conread position: 385-521
Cow position: chr16:16538545-16538686 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 106
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 80, 0

Show alignments to all cow chromosomes.