Cow genome map
| Conread name: | rthg33_p11.y1 |
| Conread position: | 260-483 |
| Cow position: | chr21:10852755-10852989 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 5, 27 |
| Conread position: | 265-486 |
| Cow position: | chr21:44763463-44763235 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 67, 21 |
| Conread position: | 335-522 |
| Cow position: | chr21:2538579-2538388 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 5, 117 |
| Conread position: | 336-521 |
| Cow position: | chr21:28614889-28615080 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 76, 51 |
| Conread position: | 336-521 |
| Cow position: | chr21:34256020-34255831 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 129, 176 |
| Conread position: | 337-520 |
| Cow position: | chr21:4091907-4092095 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 338-492 |
| Cow position: | chr21:49662922-49663077 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 338-520 |
| Cow position: | chr21:48529847-48529659 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 339-484 |
| Cow position: | chr21:24948681-24948831 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 339-486 |
| Cow position: | chr21:17143252-17143403 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 339-491 |
| Cow position: | chr21:3805503-3805652 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 339-498 |
| Cow position: | chr21:7154910-7155071 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 124, 40 |
| Conread position: | 339-499 |
| Cow position: | chr21:148723-148888 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 339-520 |
| Cow position: | chr21:5019721-5019908 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 339-520 |
| Cow position: | chr21:27068385-27068198 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 339-520 |
| Cow position: | chr21:47647911-47648098 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 339-521 |
| Cow position: | chr21:26700089-26699903 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 120, 174 |
| Conread position: | 339-521 |
| Cow position: | chr21:33317928-33317741 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 339-522 |
| Cow position: | chr21:15548298-15548111 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 120, 174 |
| Conread position: | 339-522 |
| Cow position: | chr21:21051309-21051491 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 151, 116 |
| Conread position: | 339-522 |
| Cow position: | chr21:21918060-21918246 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 126, 21 |
| Conread position: | 339-522 |
| Cow position: | chr21:24298948-24298765 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 120, 41 |
| Conread position: | 339-522 |
| Cow position: | chr21:34656537-34656723 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 122, 75 |
| Conread position: | 339-523 |
| Cow position: | chr21:5594305-5594487 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 98, 53 |
| Conread position: | 339-523 |
| Cow position: | chr21:10569269-10569455 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 122, 164 |
| Conread position: | 339-523 |
| Cow position: | chr21:13112817-13112630 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 120, 164 |
| Conread position: | 339-523 |
| Cow position: | chr21:22943192-22943379 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 123, 170 |
| Conread position: | 339-523 |
| Cow position: | chr21:49297401-49297589 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 115, 168 |
| Conread position: | 340-487 |
| Cow position: | chr21:20742090-20741939 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 340-517 |
| Cow position: | chr21:37040040-37039859 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 115, 173 |
| Conread position: | 340-522 |
| Cow position: | chr21:995854-995672 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 16, 152 |
| Conread position: | 340-522 |
| Cow position: | chr21:28879138-28878954 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 127, 51 |
| Conread position: | 341-521 |
| Cow position: | chr21:32397473-32397288 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 341-522 |
| Cow position: | chr21:4186522-4186710 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 20, 175 |
| Conread position: | 341-522 |
| Cow position: | chr21:47943530-47943710 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 124, 25 |
| Conread position: | 343-521 |
| Cow position: | chr21:21026060-21026245 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 345-488 |
| Cow position: | chr21:10519400-10519547 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 345-489 |
| Cow position: | chr21:27286026-27286174 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 345-489 |
| Cow position: | chr21:37373808-37373954 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 345-492 |
| Cow position: | chr21:27148974-27148821 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 345-492 |
| Cow position: | chr21:35143325-35143174 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 345-518 |
| Cow position: | chr21:39427658-39427836 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 345-520 |
| Cow position: | chr21:5938043-5938224 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 345-520 |
| Cow position: | chr21:7063088-7062907 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 345-520 |
| Cow position: | chr21:15398394-15398213 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 345-520 |
| Cow position: | chr21:34902800-34902624 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 149, 131 |
| Conread position: | 345-520 |
| Cow position: | chr21:41797141-41796960 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 345-521 |
| Cow position: | chr21:6966885-6966710 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 149, 119 |
| Conread position: | 345-521 |
| Cow position: | chr21:11291270-11291451 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 345-521 |
| Cow position: | chr21:19352281-19352100 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 345-521 |
| Cow position: | chr21:27620916-27620735 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 345-521 |
| Cow position: | chr21:39225474-39225298 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 149, 74 |
| Conread position: | 345-522 |
| Cow position: | chr21:35390555-35390382 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 148, 42 |
| Conread position: | 345-523 |
| Cow position: | chr21:40268802-40268621 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 114, 158 |
| Conread position: | 345-523 |
| Cow position: | chr21:42916375-42916553 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 119, 83 |
| Conread position: | 347-521 |
| Cow position: | chr21:36375572-36375751 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 349-519 |
| Cow position: | chr21:469688-469857 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 123, 110 |
| Conread position: | 351-499 |
| Cow position: | chr21:4587398-4587246 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 75, 28 |
| Conread position: | 360-521 |
| Cow position: | chr21:19613334-19613500 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 373-522 |
| Cow position: | chr21:4280001-4279850 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 89, 71 |
| Conread position: | 382-487 |
| Cow position: | chr21:24694763-24694869 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 87 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 77, 0 |
Show alignments to all cow chromosomes.