Cow genome map
| Conread name: | rthg33_p11.y1 |
| Conread position: | 263-520 |
| Cow position: | chr29:46129-45862 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 50, 23 |
| Conread position: | 319-522 |
| Cow position: | chr29:1217119-1217324 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 146, 17 |
| Conread position: | 337-520 |
| Cow position: | chr29:15624289-15624100 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 338-492 |
| Cow position: | chr29:40470823-40470980 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 126, 102 |
| Conread position: | 338-498 |
| Cow position: | chr29:22417729-22417569 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 338-519 |
| Cow position: | chr29:5980310-5980128 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 18, 151 |
| Conread position: | 339-486 |
| Cow position: | chr29:2102257-2102408 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 339-487 |
| Cow position: | chr29:9080419-9080267 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 53, 44 |
| Conread position: | 339-487 |
| Cow position: | chr29:17137143-17137295 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 339-489 |
| Cow position: | chr29:648234-648385 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 35, 44 |
| Conread position: | 339-489 |
| Cow position: | chr29:2838925-2838771 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 339-489 |
| Cow position: | chr29:6933903-6934057 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 339-489 |
| Cow position: | chr29:7428700-7428546 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 339-489 |
| Cow position: | chr29:8624781-8624631 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 339-489 |
| Cow position: | chr29:19656315-19656469 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 339-489 |
| Cow position: | chr29:23979121-23979276 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 339-489 |
| Cow position: | chr29:25930105-25929951 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 339-489 |
| Cow position: | chr29:26162424-26162271 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 120, 38 |
| Conread position: | 339-489 |
| Cow position: | chr29:27260710-27260556 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 339-489 |
| Cow position: | chr29:45206923-45207077 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 339-500 |
| Cow position: | chr29:34739425-34739259 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 339-516 |
| Cow position: | chr29:35274608-35274425 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 339-520 |
| Cow position: | chr29:13850463-13850282 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 116, 38 |
| Conread position: | 339-520 |
| Cow position: | chr29:14500278-14500462 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 128, 62 |
| Conread position: | 339-520 |
| Cow position: | chr29:17407550-17407737 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 120, 175 |
| Conread position: | 339-520 |
| Cow position: | chr29:20253578-20253760 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 120, 100 |
| Conread position: | 339-520 |
| Cow position: | chr29:32288795-32288982 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 339-521 |
| Cow position: | chr29:2415665-2415479 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 126, 174 |
| Conread position: | 339-521 |
| Cow position: | chr29:6263589-6263402 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 339-521 |
| Cow position: | chr29:45461645-45461831 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 120, 29 |
| Conread position: | 339-522 |
| Cow position: | chr29:6219384-6219201 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 126, 70 |
| Conread position: | 339-522 |
| Cow position: | chr29:14209137-14208949 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 339-522 |
| Cow position: | chr29:32804930-32805113 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 130, 30 |
| Conread position: | 340-486 |
| Cow position: | chr29:28698448-28698301 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 119, 37 |
| Conread position: | 340-514 |
| Cow position: | chr29:43255993-43255816 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 117, 42 |
| Conread position: | 340-521 |
| Cow position: | chr29:10644999-10644813 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 340-522 |
| Cow position: | chr29:9640362-9640177 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 119, 42 |
| Conread position: | 341-499 |
| Cow position: | chr29:2746040-2745877 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 341-519 |
| Cow position: | chr29:43518772-43518586 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 341-520 |
| Cow position: | chr29:608215-608035 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 153, 123 |
| Conread position: | 341-522 |
| Cow position: | chr29:107474-107655 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 118, 36 |
| Conread position: | 341-522 |
| Cow position: | chr29:13057163-13057350 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 36, 96 |
| Conread position: | 341-523 |
| Cow position: | chr29:14453709-14453885 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 71, 50 |
| Conread position: | 345-489 |
| Cow position: | chr29:529981-529833 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 345-489 |
| Cow position: | chr29:5785230-5785378 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 345-489 |
| Cow position: | chr29:28657952-28657804 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 345-519 |
| Cow position: | chr29:13922924-13923104 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 345-519 |
| Cow position: | chr29:39424721-39424541 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 345-520 |
| Cow position: | chr29:666990-666809 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 345-520 |
| Cow position: | chr29:7846812-7846989 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 149, 0 |
| Conread position: | 345-520 |
| Cow position: | chr29:13899083-13899264 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 345-520 |
| Cow position: | chr29:15260572-15260391 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 345-520 |
| Cow position: | chr29:19525872-19525691 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 345-520 |
| Cow position: | chr29:21430436-21430259 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 148, 0 |
| Conread position: | 345-520 |
| Cow position: | chr29:27977403-27977228 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 145, 83 |
| Conread position: | 345-520 |
| Cow position: | chr29:31764460-31764640 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 345-520 |
| Cow position: | chr29:42256557-42256383 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 149, 106 |
| Conread position: | 345-521 |
| Cow position: | chr29:2692867-2693044 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 148, 0 |
| Conread position: | 345-521 |
| Cow position: | chr29:5390258-5390434 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 149, 60 |
| Conread position: | 345-521 |
| Cow position: | chr29:13584635-13584814 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 345-521 |
| Cow position: | chr29:15967136-15966955 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 345-521 |
| Cow position: | chr29:16036996-16036815 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 345-521 |
| Cow position: | chr29:19889994-19890171 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 149, 0 |
| Conread position: | 345-521 |
| Cow position: | chr29:21226398-21226575 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 149, 0 |
| Conread position: | 345-521 |
| Cow position: | chr29:40293753-40293930 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 149, 0 |
| Conread position: | 345-522 |
| Cow position: | chr29:31183825-31184007 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 345-522 |
| Cow position: | chr29:40619400-40619218 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 347-521 |
| Cow position: | chr29:131941-132117 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 122, 164 |
| Conread position: | 347-521 |
| Cow position: | chr29:35299339-35299518 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 347-522 |
| Cow position: | chr29:5239812-5239992 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 348-521 |
| Cow position: | chr29:1477872-1478050 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 373-522 |
| Cow position: | chr29:21254424-21254577 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 81, 140 |
Show alignments to all cow chromosomes.