Cow genome map

Conread name: rthg33_p11.y1

Conread position: 320-521
Cow position: chr9:54460271-54460067 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 151
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 9, 147

Conread position: 322-520
Cow position: chr9:20780188-20780390 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 145
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 10, 15

Conread position: 336-489
Cow position: chr9:31809878-31810031 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 111
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 338-489
Cow position: chr9:6251568-6251723 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 121, 0

Conread position: 339-485
Cow position: chr9:19156982-19156836 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 106
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 339-486
Cow position: chr9:18507528-18507377 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 115
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 120, 0

Conread position: 339-486
Cow position: chr9:47005040-47005192 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 114
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 120, 0

Conread position: 339-487
Cow position: chr9:17900268-17900120 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 111
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 339-489
Cow position: chr9:5627115-5627271 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 116
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 113, 0

Conread position: 339-489
Cow position: chr9:10939022-10939176 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 122, 0

Conread position: 339-489
Cow position: chr9:16177893-16178047 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 113
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 120, 0

Conread position: 339-489
Cow position: chr9:18538962-18539116 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 113
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 134, 0

Conread position: 339-489
Cow position: chr9:26082022-26081867 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 119
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 114, 0

Conread position: 339-489
Cow position: chr9:27037409-27037564 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 116
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 78, 62

Conread position: 339-489
Cow position: chr9:28658750-28658596 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 113
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 120, 0

Conread position: 339-489
Cow position: chr9:30674369-30674523 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 113
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 122, 0

Conread position: 339-489
Cow position: chr9:43302921-43302767 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 114
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 128, 0

Conread position: 339-499
Cow position: chr9:7059764-7059599 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 120
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 120, 0

Conread position: 339-499
Cow position: chr9:10856317-10856486 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 17, 0

Conread position: 339-499
Cow position: chr9:27782592-27782427 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 122
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 120, 0

Conread position: 339-519
Cow position: chr9:5534919-5534732 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 133
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 123, 0

Conread position: 339-519
Cow position: chr9:31113455-31113640 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 133
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 124, 40

Conread position: 339-519
Cow position: chr9:59480550-59480364 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 134
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 120, 0

Conread position: 339-519
Cow position: chr9:59508862-59508684 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 124
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 25, 0

Conread position: 339-520
Cow position: chr9:22655112-22655299 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 135
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 120, 0

Conread position: 339-520
Cow position: chr9:32971676-32971863 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 138
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 120, 0

Conread position: 339-520
Cow position: chr9:34770455-34770642 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 139
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 119, 0

Conread position: 339-520
Cow position: chr9:35593781-35593594 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 140
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 116, 0

Conread position: 339-520
Cow position: chr9:44521219-44521401 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 136
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 40, 104

Conread position: 339-520
Cow position: chr9:64006143-64005957 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 139
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 126, 0

Conread position: 339-521
Cow position: chr9:1729006-1728819 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 139
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 128, 0

Conread position: 339-521
Cow position: chr9:1983117-1983303 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 138
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 126, 40

Conread position: 339-521
Cow position: chr9:11503971-11504158 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 133
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 122, 0

Conread position: 339-521
Cow position: chr9:13473480-13473294 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 136
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 122, 23

Conread position: 339-521
Cow position: chr9:22320405-22320219 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 132
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 122, 170

Conread position: 339-521
Cow position: chr9:52722723-52722905 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 138
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 7, 93

Conread position: 339-521
Cow position: chr9:59196154-59196340 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 136
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 128, 174

Conread position: 339-522
Cow position: chr9:649745-649564 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 134
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 116, 38

Conread position: 339-522
Cow position: chr9:792014-791826 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 136
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 66, 175

Conread position: 339-522
Cow position: chr9:2630900-2631081 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 135
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 120, 154

Conread position: 339-522
Cow position: chr9:5526336-5526149 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 136
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 69, 62

Conread position: 339-522
Cow position: chr9:17303668-17303488 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 136
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 123, 89

Conread position: 339-522
Cow position: chr9:19077956-19078143 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 144
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 120, 174

Conread position: 339-522
Cow position: chr9:37160515-37160328 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 131
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 120, 157

Conread position: 339-523
Cow position: chr9:2594961-2595147 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 133
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 125, 10

Conread position: 339-523
Cow position: chr9:12250417-12250600 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 135
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 116, 136

Conread position: 339-523
Cow position: chr9:17632771-17632957 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 138
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 120, 84

Conread position: 339-523
Cow position: chr9:26738316-26738505 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 135
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 120, 0

Conread position: 339-523
Cow position: chr9:33069371-33069183 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 146
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 120, 174

Conread position: 340-461
Cow position: chr9:8164597-8164477 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 94
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 52, 0

Conread position: 340-478
Cow position: chr9:31091485-31091622 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 109
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 132, 50

Conread position: 340-485
Cow position: chr9:21411609-21411758 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 119, 0

Conread position: 340-513
Cow position: chr9:18778762-18778584 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 130
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 39, 172

Conread position: 340-515
Cow position: chr9:10759756-10759932 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 135
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 121, 7

Conread position: 340-521
Cow position: chr9:9198418-9198593 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 134
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 149, 81

Conread position: 341-489
Cow position: chr9:1992235-1992083 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 112
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 118, 0

Conread position: 341-518
Cow position: chr9:43666958-43667135 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 137
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 100, 58

Conread position: 341-522
Cow position: chr9:3577182-3577001 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 139
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 152, 164

Conread position: 342-520
Cow position: chr9:50775143-50775326 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 130
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 37, 172

Conread position: 345-489
Cow position: chr9:17062083-17061943 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 109
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 119, 0

Conread position: 345-489
Cow position: chr9:28024114-28024262 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 111
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 114, 0

Conread position: 345-489
Cow position: chr9:42311997-42312145 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 112
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 114, 0

Conread position: 345-492
Cow position: chr9:14002347-14002495 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 110
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 79, 0

Conread position: 345-519
Cow position: chr9:15053580-15053399 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 130
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 11, 0

Conread position: 345-520
Cow position: chr9:999769-999950 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 129
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 119, 0

Conread position: 345-520
Cow position: chr9:1098898-1099079 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 133
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 114, 0

Conread position: 345-520
Cow position: chr9:1249689-1249512 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 128
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 149, 0

Conread position: 345-520
Cow position: chr9:2807052-2806871 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 130
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 119, 0

Conread position: 345-520
Cow position: chr9:3310923-3311104 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 128
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 119, 0

Conread position: 345-520
Cow position: chr9:4941185-4941009 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 130
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 148, 89

Conread position: 345-520
Cow position: chr9:5453557-5453738 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 131
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 119, 0

Conread position: 345-520
Cow position: chr9:20940761-20940942 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 135
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 122, 0

Conread position: 345-520
Cow position: chr9:22473984-22473803 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 131
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 119, 0

Conread position: 345-520
Cow position: chr9:26421671-26421490 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 131
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 119, 0

Conread position: 345-520
Cow position: chr9:28680280-28680460 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 131
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 119, 51

Conread position: 345-520
Cow position: chr9:30829060-30829237 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 129
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 149, 0

Conread position: 345-520
Cow position: chr9:31418199-31418018 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 128
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 119, 0

Conread position: 345-520
Cow position: chr9:35544224-35544043 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 131
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 119, 0

Conread position: 345-520
Cow position: chr9:37175109-37175290 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 130
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 118, 0

Conread position: 345-520
Cow position: chr9:45875824-45876005 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 133
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 119, 0

Conread position: 345-520
Cow position: chr9:48795988-48795807 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 130
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 110, 0

Conread position: 345-520
Cow position: chr9:50326149-50326330 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 131
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 119, 0

Conread position: 345-520
Cow position: chr9:52525462-52525643 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 130
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 119, 0

Conread position: 345-521
Cow position: chr9:6884634-6884815 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 130
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 119, 0

Conread position: 345-521
Cow position: chr9:6921450-6921269 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 129
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 119, 0

Conread position: 345-521
Cow position: chr9:22441800-22441980 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 136
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 114, 168

Conread position: 345-521
Cow position: chr9:34240795-34240614 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 131
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 119, 0

Conread position: 345-521
Cow position: chr9:44167899-44168076 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 132
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 149, 60

Conread position: 345-521
Cow position: chr9:44203764-44203583 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 130
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 119, 0

Conread position: 345-521
Cow position: chr9:47044275-47044456 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 129
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 119, 0

Conread position: 345-521
Cow position: chr9:56176079-56176256 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 128
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 149, 0

Conread position: 345-521
Cow position: chr9:56302135-56301954 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 129
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 119, 0

Conread position: 345-521
Cow position: chr9:64012916-64012735 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 132
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 119, 0

Conread position: 345-523
Cow position: chr9:778511-778328 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 130
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 119, 0

Conread position: 345-523
Cow position: chr9:7005023-7005203 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 130
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 114, 158

Conread position: 346-521
Cow position: chr9:202985-202805 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 131
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 118, 0

Conread position: 346-523
Cow position: chr9:27897325-27897506 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 129
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 54, 158

Conread position: 348-479
Cow position: chr9:1639052-1639184 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 101
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 115, 0

Conread position: 351-522
Cow position: chr9:33950898-33950723 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 128
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 111, 162

Conread position: 352-522
Cow position: chr9:54680430-54680256 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 126
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 113, 161

Conread position: 354-521
Cow position: chr9:8739181-8739010 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 124
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 105, 25

Conread position: 360-492
Cow position: chr9:26276977-26277113 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 103
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 104, 0

Conread position: 373-520
Cow position: chr9:26054381-26054533 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 62, 132

Show alignments to all cow chromosomes.