Cow genome map

Conread name: rthg35_b22.y1

Conread position: 4-318
Cow position: chrX:6544211-6543895 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 42

Conread position: 5-151
Cow position: chrX:18195889-18195748 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 116
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 38, 18

Conread position: 5-252
Cow position: chrX:18194869-18194618 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 179
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 55, 8

Conread position: 5-294
Cow position: chrX:42855369-42855073 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 205

Conread position: 5-304
Cow position: chrX:32583855-32584160 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 217
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 66, 11

Conread position: 5-306
Cow position: chrX:1550908-1550600 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 219
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 73, 8

Conread position: 5-310
Cow position: chrX:2478670-2478981 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 8

Conread position: 5-310
Cow position: chrX:4905033-4905343 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 12

Conread position: 5-310
Cow position: chrX:30143327-30143638 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 12

Conread position: 5-313
Cow position: chrX:9096623-9096310 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 12

Conread position: 5-320
Cow position: chrX:12179919-12179605 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 8

Conread position: 5-320
Cow position: chrX:26531916-26531595 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 12

Conread position: 5-320
Cow position: chrX:30454664-30454985 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 225
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 66, 8

Conread position: 5-320
Cow position: chrX:35240820-35240501 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 8

Conread position: 5-332
Cow position: chrX:19690183-19689837 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 273

Conread position: 6-320
Cow position: chrX:32188406-32188722 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 222
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 68, 7

Conread position: 7-325
Cow position: chrX:16711910-16711586 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 229
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 64, 9

Conread position: 8-174
Cow position: chrX:25036744-25036918 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 139
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 37, 73

Conread position: 9-136
Cow position: chrX:36061108-36060973 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 109
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 39, 0

Conread position: 9-172
Cow position: chrX:39126282-39126123 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 124
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 69, 43

Conread position: 9-189
Cow position: chrX:48684275-48684455 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 139
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 37, 70

Conread position: 9-214
Cow position: chrX:48652770-48652988 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 159
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 40, 0

Conread position: 9-233
Cow position: chrX:45403877-45404111 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 179
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 39, 0

Conread position: 9-267
Cow position: chrX:47873386-47873651 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 194
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 38, 127

Conread position: 9-317
Cow position: chrX:31260677-31260991 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 21

Conread position: 9-318
Cow position: chrX:151855-151537 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 114

Conread position: 9-318
Cow position: chrX:28105870-28105565 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 36

Conread position: 9-320
Cow position: chrX:38218660-38218355 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 35

Conread position: 10-101
Cow position: chrX:11614649-11614556 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 81
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 67, 0

Conread position: 10-103
Cow position: chrX:29723691-29723596 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 83
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 65, 0

Conread position: 10-107
Cow position: chrX:29680311-29680409 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 85
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 66, 36

Conread position: 10-115
Cow position: chrX:27228077-27227966 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 96
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 36, 0

Conread position: 10-121
Cow position: chrX:41068670-41068564 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 93
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 36, 0

Conread position: 10-124
Cow position: chrX:27145572-27145457 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 66, 36

Conread position: 10-126
Cow position: chrX:22387293-22387416 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 105
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 65, 0

Conread position: 10-127
Cow position: chrX:25207892-25208016 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 36, 0

Conread position: 10-127
Cow position: chrX:32820979-32820859 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 102
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 43, 0

Conread position: 10-127
Cow position: chrX:37955782-37955668 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 97
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 68, 36

Conread position: 10-138
Cow position: chrX:7336778-7336646 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 113
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 66, 0

Conread position: 10-146
Cow position: chrX:1505660-1505524 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 103
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 37, 116

Conread position: 10-146
Cow position: chrX:23785611-23785465 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 125
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 43, 0

Conread position: 10-146
Cow position: chrX:24149590-24149451 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 114
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 68, 36

Conread position: 10-149
Cow position: chrX:43730269-43730406 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 112
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 59, 36

Conread position: 10-150
Cow position: chrX:8991834-8991695 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 108
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 68, 0

Conread position: 10-153
Cow position: chrX:47484316-47484467 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 37, 0

Conread position: 10-155
Cow position: chrX:33000852-33000706 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 119
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 90, 36

Conread position: 10-155
Cow position: chrX:36961592-36961438 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 125
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 43, 0

Conread position: 10-157
Cow position: chrX:1499616-1499470 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 119
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 37, 69

Conread position: 10-157
Cow position: chrX:43779897-43780052 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 121
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 61, 0

Conread position: 10-157
Cow position: chrX:45149130-45148975 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 122
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 38, 0

Conread position: 10-158
Cow position: chrX:4091597-4091447 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 116
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 35, 0

Conread position: 10-164
Cow position: chrX:3579895-3579737 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 128
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 27, 0

Conread position: 10-164
Cow position: chrX:46587769-46587611 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 123
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 35, 0

Conread position: 10-165
Cow position: chrX:9425791-9425949 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 130
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 90, 35

Conread position: 10-165
Cow position: chrX:16324015-16324171 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 129
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 36, 0

Conread position: 10-165
Cow position: chrX:27174945-27174787 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 128
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 67, 0

Conread position: 10-165
Cow position: chrX:29542270-29542426 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 131
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 66, 36

Conread position: 10-165
Cow position: chrX:32420169-32420011 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 132
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 63, 0

Conread position: 10-168
Cow position: chrX:37541074-37540916 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 124
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 38, 144

Conread position: 10-171
Cow position: chrX:34411791-34411625 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 132
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 68, 36

Conread position: 10-172
Cow position: chrX:10123394-10123562 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 126
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 42, 0

Conread position: 10-173
Cow position: chrX:8070748-8070916 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 124
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 68, 150

Conread position: 10-173
Cow position: chrX:28013498-28013656 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 119
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 154, 64

Conread position: 10-173
Cow position: chrX:45015528-45015369 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 127
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 153, 72

Conread position: 10-174
Cow position: chrX:16541722-16541893 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 138
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 38, 160

Conread position: 10-174
Cow position: chrX:29601881-29602050 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 145
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 67, 36

Conread position: 10-174
Cow position: chrX:37781162-37781330 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 136
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 66, 36

Conread position: 10-176
Cow position: chrX:1503287-1503120 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 135
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 68, 36

Conread position: 10-176
Cow position: chrX:36283301-36283126 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 135
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 37, 0

Conread position: 10-182
Cow position: chrX:4750355-4750523 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 140
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 66, 36

Conread position: 10-182
Cow position: chrX:29509492-29509669 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 142
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 33, 0

Conread position: 10-182
Cow position: chrX:43049298-43049117 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 144
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 68, 0

Conread position: 10-184
Cow position: chrX:11856378-11856202 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 145
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 64, 139

Conread position: 10-186
Cow position: chrX:7721938-7721755 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 145
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 66, 36

Conread position: 10-186
Cow position: chrX:12405434-12405598 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 144
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 39, 99

Conread position: 10-187
Cow position: chrX:13265674-13265850 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 141
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 153, 36

Conread position: 10-189
Cow position: chrX:6278551-6278738 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 146
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 40, 0

Conread position: 10-189
Cow position: chrX:36975901-36975717 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 147
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 37, 0

Conread position: 10-190
Cow position: chrX:42338993-42339169 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 155
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 36

Conread position: 10-191
Cow position: chrX:11589638-11589826 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 155
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 66, 96

Conread position: 10-191
Cow position: chrX:27514824-27514634 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 148
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 38, 13

Conread position: 10-191
Cow position: chrX:30420980-30421173 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 148
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 68, 36

Conread position: 10-191
Cow position: chrX:30962924-30963106 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 142
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 71, 67

Conread position: 10-191
Cow position: chrX:48010550-48010360 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 144
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 36, 0

Conread position: 10-192
Cow position: chrX:877077-877258 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 140
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 65, 0

Conread position: 10-193
Cow position: chrX:2206601-2206780 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 150
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 153, 54

Conread position: 10-193
Cow position: chrX:23514066-23514254 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 160
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 66, 36

Conread position: 10-193
Cow position: chrX:34543737-34543551 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 154
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 38, 118

Conread position: 10-193
Cow position: chrX:38549396-38549212 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 154
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 65, 30

Conread position: 10-193
Cow position: chrX:44961698-44961511 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 154
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 94, 64

Conread position: 10-194
Cow position: chrX:40116370-40116188 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 151
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 66, 36

Conread position: 10-196
Cow position: chrX:41167015-41167203 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 161
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 0

Conread position: 10-198
Cow position: chrX:1514457-1514645 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 153
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 153, 68

Conread position: 10-198
Cow position: chrX:30832898-30833079 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 152
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 90, 36

Conread position: 10-198
Cow position: chrX:43567871-43567698 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 141
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 153, 36

Conread position: 10-211
Cow position: chrX:28878220-28878416 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 160
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 41, 50

Conread position: 10-211
Cow position: chrX:41674059-41673849 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 158
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 54, 206

Conread position: 10-211
Cow position: chrX:46315428-46315634 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 157
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 66, 34

Conread position: 10-215
Cow position: chrX:32020170-32020380 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 0

Conread position: 10-217
Cow position: chrX:17662644-17662855 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 172
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 66, 36

Conread position: 10-219
Cow position: chrX:27431965-27432180 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 172
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 66, 36

Conread position: 10-225
Cow position: chrX:8925650-8925438 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 169
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 145, 36

Conread position: 10-227
Cow position: chrX:40183394-40183620 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 0

Conread position: 10-230
Cow position: chrX:12018241-12018002 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 187
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 40, 111

Conread position: 10-232
Cow position: chrX:30922135-30921910 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 177
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 38, 121

Conread position: 10-237
Cow position: chrX:8731036-8730799 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 0

Conread position: 10-237
Cow position: chrX:9997386-9997611 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 32

Conread position: 10-237
Cow position: chrX:40647935-40647698 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 0

Conread position: 10-238
Cow position: chrX:6640079-6639841 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 182
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 35, 200

Conread position: 10-238
Cow position: chrX:21672505-21672268 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 178
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 68, 0

Conread position: 10-238
Cow position: chrX:37836538-37836308 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 68

Conread position: 10-238
Cow position: chrX:42874933-42874697 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 0

Conread position: 10-239
Cow position: chrX:678617-678846 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 179
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 66, 36

Conread position: 10-240
Cow position: chrX:2467835-2467597 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 192

Conread position: 10-243
Cow position: chrX:46032771-46033004 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 176
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 35, 155

Conread position: 10-245
Cow position: chrX:46722785-46723029 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 0

Conread position: 10-247
Cow position: chrX:4269112-4269357 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 188
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 36, 216

Conread position: 10-255
Cow position: chrX:19015387-19015144 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 36

Conread position: 10-266
Cow position: chrX:14924950-14924691 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 133

Conread position: 10-266
Cow position: chrX:23061395-23061145 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 0

Conread position: 10-267
Cow position: chrX:45373338-45373602 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 193
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 19, 134

Conread position: 10-268
Cow position: chrX:25238123-25237866 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 19

Conread position: 10-273
Cow position: chrX:28845780-28845528 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 57

Conread position: 10-283
Cow position: chrX:15545843-15545571 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 91

Conread position: 10-287
Cow position: chrX:35681290-35681005 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 93

Conread position: 10-288
Cow position: chrX:10306624-10306342 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 189

Conread position: 10-291
Cow position: chrX:6234503-6234768 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 0

Conread position: 10-294
Cow position: chrX:43527459-43527165 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 10-297
Cow position: chrX:41403928-41403621 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 0

Conread position: 10-297
Cow position: chrX:41410476-41410169 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 0

Conread position: 10-304
Cow position: chrX:29048970-29048686 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 210
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 57, 0

Conread position: 10-304
Cow position: chrX:31436427-31436133 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 36

Conread position: 10-304
Cow position: chrX:44396967-44396673 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 215
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 102, 35

Conread position: 10-309
Cow position: chrX:45089398-45089085 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 222
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 38, 135

Conread position: 10-311
Cow position: chrX:34554675-34554381 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 85

Conread position: 10-311
Cow position: chrX:35609938-35609632 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 0

Conread position: 10-316
Cow position: chrX:37843672-37843361 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 0

Conread position: 10-317
Cow position: chrX:1616095-1616411 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 36

Conread position: 10-317
Cow position: chrX:4632900-4633211 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 93

Conread position: 10-317
Cow position: chrX:24287976-24288273 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 232
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 66, 35

Conread position: 10-318
Cow position: chrX:161362-161067 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 47

Conread position: 10-318
Cow position: chrX:5017465-5017767 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 36

Conread position: 10-318
Cow position: chrX:7718805-7718497 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 36

Conread position: 10-318
Cow position: chrX:9855254-9854918 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 0

Conread position: 10-318
Cow position: chrX:9954095-9953759 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 0

Conread position: 10-318
Cow position: chrX:11806064-11806377 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 36

Conread position: 10-318
Cow position: chrX:14599482-14599176 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 36

Conread position: 10-318
Cow position: chrX:17794932-17794634 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 34

Conread position: 10-318
Cow position: chrX:33855284-33855601 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 36

Conread position: 10-318
Cow position: chrX:34401947-34401637 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 36

Conread position: 10-318
Cow position: chrX:35387953-35388268 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 36

Conread position: 10-318
Cow position: chrX:37072357-37072045 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 36

Conread position: 10-318
Cow position: chrX:37232362-37232050 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 36

Conread position: 10-318
Cow position: chrX:42994562-42994253 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 14

Conread position: 10-319
Cow position: chrX:11073243-11073567 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 19

Conread position: 10-319
Cow position: chrX:18694975-18695283 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 33

Conread position: 10-319
Cow position: chrX:23563841-23564158 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 312

Conread position: 10-319
Cow position: chrX:28846932-28847238 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 68

Conread position: 10-319
Cow position: chrX:30543339-30543644 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 34

Conread position: 10-319
Cow position: chrX:34441502-34441809 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 132

Conread position: 10-319
Cow position: chrX:38964054-38963749 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 37

Conread position: 10-320
Cow position: chrX:4123787-4123473 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 74

Conread position: 10-320
Cow position: chrX:5872270-5871950 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 201

Conread position: 10-320
Cow position: chrX:7571852-7571540 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 36

Conread position: 10-320
Cow position: chrX:8797202-8796888 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 202

Conread position: 10-320
Cow position: chrX:10831544-10831875 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 34

Conread position: 10-320
Cow position: chrX:11581894-11581574 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 234

Conread position: 10-320
Cow position: chrX:11656041-11655715 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 36

Conread position: 10-320
Cow position: chrX:12115995-12115678 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 188

Conread position: 10-320
Cow position: chrX:13868652-13868334 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 202

Conread position: 10-320
Cow position: chrX:15485675-15485988 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 197

Conread position: 10-320
Cow position: chrX:17498034-17497733 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 36

Conread position: 10-320
Cow position: chrX:19019157-19019455 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 62

Conread position: 10-320
Cow position: chrX:25035430-25035749 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 214

Conread position: 10-320
Cow position: chrX:27516478-27516171 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 67

Conread position: 10-320
Cow position: chrX:27705536-27705230 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 73

Conread position: 10-320
Cow position: chrX:28134294-28133986 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 42

Conread position: 10-320
Cow position: chrX:34502871-34502560 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 36

Conread position: 10-320
Cow position: chrX:34662898-34663223 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 60

Conread position: 10-320
Cow position: chrX:34754238-34754555 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 10-320
Cow position: chrX:35268831-35268530 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 36

Conread position: 10-320
Cow position: chrX:36249912-36250225 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 0

Conread position: 10-320
Cow position: chrX:38071815-38072130 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 212

Conread position: 10-320
Cow position: chrX:38094572-38094888 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 120

Conread position: 10-320
Cow position: chrX:38439427-38439111 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 36

Conread position: 10-320
Cow position: chrX:38967597-38967288 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 65

Conread position: 10-320
Cow position: chrX:39558401-39558730 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 36

Conread position: 10-320
Cow position: chrX:40826802-40827110 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 81

Conread position: 10-320
Cow position: chrX:41199056-41198723 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 72

Conread position: 10-320
Cow position: chrX:41743861-41743550 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 78

Conread position: 10-320
Cow position: chrX:42171347-42171662 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 36

Conread position: 10-320
Cow position: chrX:42461795-42462111 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 35

Conread position: 10-320
Cow position: chrX:44054756-44054441 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 189

Conread position: 10-320
Cow position: chrX:45113568-45113273 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 66

Conread position: 10-320
Cow position: chrX:45968109-45967798 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 36

Conread position: 10-322
Cow position: chrX:20339940-20340256 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 36

Conread position: 10-323
Cow position: chrX:15139596-15139917 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 36

Conread position: 10-324
Cow position: chrX:3654557-3654241 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 36

Conread position: 10-324
Cow position: chrX:12309436-12309756 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 54

Conread position: 11-165
Cow position: chrX:44063770-44063924 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 38, 18

Conread position: 11-189
Cow position: chrX:15815035-15814865 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 141
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 152, 35

Conread position: 11-198
Cow position: chrX:47756978-47757170 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 144
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 42, 0

Conread position: 11-257
Cow position: chrX:33020432-33020186 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 14

Conread position: 11-260
Cow position: chrX:16762719-16762470 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 99

Conread position: 11-287
Cow position: chrX:34454615-34454344 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 97

Conread position: 11-294
Cow position: chrX:32170937-32171219 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 79

Conread position: 11-320
Cow position: chrX:12290676-12290374 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 53

Conread position: 11-320
Cow position: chrX:27446644-27446328 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 72

Conread position: 11-320
Cow position: chrX:37489676-37489355 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 68

Conread position: 11-320
Cow position: chrX:41123016-41122710 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 0

Conread position: 12-116
Cow position: chrX:36356062-36355957 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 89
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 64, 34

Conread position: 13-128
Cow position: chrX:41271261-41271378 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 99
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 63, 0

Conread position: 13-174
Cow position: chrX:29120992-29120841 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 125
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 33, 0

Conread position: 13-174
Cow position: chrX:37910392-37910235 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 131
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 151, 33

Conread position: 13-175
Cow position: chrX:11633626-11633460 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 132
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 37, 0

Conread position: 13-176
Cow position: chrX:46072874-46073041 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 129
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 90, 33

Conread position: 13-187
Cow position: chrX:6488523-6488357 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 139
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 148, 65

Conread position: 13-191
Cow position: chrX:13382276-13382090 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 148
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 63, 0

Conread position: 13-191
Cow position: chrX:27394074-27394248 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 145
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 149, 33

Conread position: 13-200
Cow position: chrX:35284566-35284374 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 154
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 149, 65

Conread position: 13-209
Cow position: chrX:23497722-23497915 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 165
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 0

Conread position: 13-243
Cow position: chrX:48195091-48195327 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 0

Conread position: 13-253
Cow position: chrX:30133374-30133620 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 127

Conread position: 13-271
Cow position: chrX:7351247-7350988 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 120

Conread position: 13-317
Cow position: chrX:7382280-7381964 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 242

Conread position: 13-318
Cow position: chrX:20697658-20697965 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 185

Conread position: 13-320
Cow position: chrX:21593234-21592923 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 195

Conread position: 13-320
Cow position: chrX:26440832-26441143 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 65

Conread position: 13-320
Cow position: chrX:46532555-46532883 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 0

Conread position: 14-155
Cow position: chrX:40809634-40809489 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 34, 0

Conread position: 14-161
Cow position: chrX:17908341-17908487 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 125
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 85, 32

Conread position: 14-173
Cow position: chrX:40567552-40567383 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 129
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 32, 0

Conread position: 14-183
Cow position: chrX:22074745-22074574 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 139
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 61, 32

Conread position: 14-193
Cow position: chrX:25411786-25411604 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 150
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 33, 29

Conread position: 14-195
Cow position: chrX:45598656-45598842 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 138
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 62, 39

Conread position: 14-217
Cow position: chrX:20752200-20752003 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 154
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 194, 71

Conread position: 14-247
Cow position: chrX:44834864-44835106 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 179
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 34, 0

Conread position: 14-291
Cow position: chrX:7646201-7645924 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 32

Conread position: 14-305
Cow position: chrX:47967546-47967252 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 182

Conread position: 14-318
Cow position: chrX:8899975-8899664 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 300

Conread position: 14-320
Cow position: chrX:15007204-15007514 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 109

Conread position: 14-320
Cow position: chrX:40480923-40481234 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 144

Conread position: 14-320
Cow position: chrX:41878987-41879293 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 32

Conread position: 14-325
Cow position: chrX:31489465-31489144 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 63

Conread position: 15-127
Cow position: chrX:4399073-4398956 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 97
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 61, 31

Conread position: 15-165
Cow position: chrX:47046562-47046727 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 126
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 33, 0

Conread position: 15-175
Cow position: chrX:7863622-7863787 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 123
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 33, 138

Conread position: 15-183
Cow position: chrX:45566582-45566404 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 135
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 65, 0

Conread position: 15-222
Cow position: chrX:45393170-45393383 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 165
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 33, 128

Conread position: 15-232
Cow position: chrX:47191461-47191670 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 169
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 64, 29

Conread position: 15-284
Cow position: chrX:7695693-7695437 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 0

Conread position: 15-294
Cow position: chrX:15596988-15596708 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 212

Conread position: 15-297
Cow position: chrX:31442877-31443160 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 227

Conread position: 15-304
Cow position: chrX:42492569-42492877 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 0

Conread position: 15-306
Cow position: chrX:20887695-20887993 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 112

Conread position: 15-318
Cow position: chrX:878433-878731 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 31

Conread position: 15-318
Cow position: chrX:20582972-20582669 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 31

Conread position: 15-318
Cow position: chrX:26625726-26626050 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 31

Conread position: 15-318
Cow position: chrX:40452265-40452573 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 28

Conread position: 15-318
Cow position: chrX:44192499-44192801 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 96

Conread position: 15-320
Cow position: chrX:4043910-4044221 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 31

Conread position: 15-320
Cow position: chrX:10437715-10438014 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 169

Conread position: 15-320
Cow position: chrX:11082670-11082977 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 31

Conread position: 15-320
Cow position: chrX:11844300-11844601 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 105

Conread position: 15-320
Cow position: chrX:42507693-42508007 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 198

Conread position: 16-176
Cow position: chrX:6265656-6265805 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 123
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 149, 29

Conread position: 16-232
Cow position: chrX:34270345-34270141 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 166
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 60, 82

Conread position: 16-297
Cow position: chrX:47481745-47481460 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 207
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 28, 232

Conread position: 17-233
Cow position: chrX:45437160-45436934 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 164
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 60, 158

Conread position: 17-288
Cow position: chrX:31948991-31949261 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 52

Conread position: 18-322
Cow position: chrX:28866058-28866354 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 18-340
Cow position: chrX:36778353-36778023 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 312

Conread position: 21-161
Cow position: chrX:29544939-29545083 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 117
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 54, 85

Conread position: 22-248
Cow position: chrX:35042162-35041931 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 176
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 42, 187

Conread position: 22-320
Cow position: chrX:30179986-30180289 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 298

Conread position: 29-318
Cow position: chrX:7178832-7178551 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 34

Show alignments to all cow chromosomes.