Cow genome map
| Conread name: | rton1219b_i23.y1 |
| Conread position: | 1-126 |
| Cow position: | chr1:92999279-92999155 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-136 |
| Cow position: | chr1:40206855-40206989 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 35, 55 |
| Conread position: | 1-140 |
| Cow position: | chr1:98576305-98576169 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 35, 53 |
| Conread position: | 2-128 |
| Cow position: | chr1:69265056-69264930 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 36, 46 |
| Conread position: | 2-132 |
| Cow position: | chr1:95153473-95153344 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 2-142 |
| Cow position: | chr1:92384552-92384407 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 17, 59 |
| Conread position: | 2-145 |
| Cow position: | chr1:59659269-59659413 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 36, 51 |
| Conread position: | 3-125 |
| Cow position: | chr1:47883368-47883489 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 3-126 |
| Cow position: | chr1:68400040-68400163 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 33, 52 |
| Conread position: | 3-130 |
| Cow position: | chr1:341854-341980 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 99 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 3-142 |
| Cow position: | chr1:89835749-89835611 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 3-144 |
| Cow position: | chr1:65883442-65883301 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 35, 52 |
| Conread position: | 3-177 |
| Cow position: | chr1:59698879-59698705 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 35, 52 |
| Conread position: | 3-243 |
| Cow position: | chr1:76436772-76436529 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 31, 54 |
| Conread position: | 5-125 |
| Cow position: | chr1:34767520-34767400 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 30, 50 |
| Conread position: | 6-138 |
| Cow position: | chr1:96136708-96136576 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 16, 48 |
| Conread position: | 6-143 |
| Cow position: | chr1:46220956-46221093 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 23, 44 |
| Conread position: | 7-134 |
| Cow position: | chr1:19304824-19304698 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 28, 48 |
| Conread position: | 7-145 |
| Cow position: | chr1:67304982-67305123 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 7-162 |
| Cow position: | chr1:98556893-98557048 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 25, 52 |
| Conread position: | 8-142 |
| Cow position: | chr1:50287579-50287714 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 8-251 |
| Cow position: | chr1:57359743-57359503 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 206, 46 |
| Conread position: | 9-128 |
| Cow position: | chr1:93235291-93235409 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 9-144 |
| Cow position: | chr1:81613704-81613567 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 113, 45 |
| Conread position: | 9-145 |
| Cow position: | chr1:50992180-50992044 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 128, 46 |
| Conread position: | 11-122 |
| Cow position: | chr1:84813249-84813139 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 89 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 11-131 |
| Cow position: | chr1:92684460-92684581 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 21, 45 |
| Conread position: | 13-134 |
| Cow position: | chr1:8347370-8347249 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 22, 43 |
| Conread position: | 18-122 |
| Cow position: | chr1:63742189-63742293 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 87 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 20, 38 |
| Conread position: | 18-125 |
| Cow position: | chr1:85162315-85162422 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 18, 37 |
| Conread position: | 18-129 |
| Cow position: | chr1:42179525-42179415 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 90 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 18-143 |
| Cow position: | chr1:10636965-10636843 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 18-145 |
| Cow position: | chr1:67544831-67544961 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 18, 37 |
| Conread position: | 18-146 |
| Cow position: | chr1:2935378-2935251 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 18, 38 |
| Conread position: | 18-251 |
| Cow position: | chr1:67919031-67918798 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 165, 29 |
| Conread position: | 19-135 |
| Cow position: | chr1:7359378-7359262 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 17, 34 |
| Conread position: | 19-135 |
| Cow position: | chr1:77892379-77892263 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 17, 36 |
| Conread position: | 19-139 |
| Cow position: | chr1:80422843-80422724 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 19, 35 |
| Conread position: | 20-135 |
| Cow position: | chr1:75080328-75080443 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 16, 35 |
| Conread position: | 20-144 |
| Cow position: | chr1:76081048-76080927 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 16, 35 |
| Conread position: | 21-134 |
| Cow position: | chr1:51654883-51654772 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 15, 34 |
| Conread position: | 22-140 |
| Cow position: | chr1:81580416-81580299 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 23-144 |
| Cow position: | chr1:83748175-83748054 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 117, 32 |
| Conread position: | 25-133 |
| Cow position: | chr1:24791694-24791801 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 90 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 25-145 |
| Cow position: | chr1:77588631-77588750 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 101, 12 |
| Conread position: | 26-130 |
| Cow position: | chr1:98605499-98605603 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 90 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 10, 30 |
| Conread position: | 27-145 |
| Cow position: | chr1:9181890-9181773 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 34-145 |
| Cow position: | chr1:89920702-89920592 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 38-140 |
| Cow position: | chr1:65909736-65909634 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 32, 14 |
| Conread position: | 54-153 |
| Cow position: | chr1:67820751-67820850 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 84 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 56-143 |
| Cow position: | chr1:97427493-97427406 (view UCSC Genome Browser custom track) |
| Alignm length: | 88 |
| Alignm identity: | 78 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 64-145 |
| Cow position: | chr1:75188993-75189074 (view UCSC Genome Browser custom track) |
| Alignm length: | 82 |
| Alignm identity: | 75 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 75-177 |
| Cow position: | chr1:74517283-74517377 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 89 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 10, 0 |
Show alignments to all cow chromosomes.