Cow genome map
| Conread name: | rton1219b_i23.y1 |
| Conread position: | 1-118 |
| Cow position: | chr5:16201805-16201923 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 31, 55 |
| Conread position: | 1-138 |
| Cow position: | chr5:34301196-34301058 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 40, 55 |
| Conread position: | 1-140 |
| Cow position: | chr5:4956331-4956470 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 35, 55 |
| Conread position: | 2-145 |
| Cow position: | chr5:51935470-51935326 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 34, 53 |
| Conread position: | 3-144 |
| Cow position: | chr5:9353673-9353815 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 35, 52 |
| Conread position: | 4-112 |
| Cow position: | chr5:61049581-61049474 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 88 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 4-142 |
| Cow position: | chr5:51018954-51018819 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 5-138 |
| Cow position: | chr5:5029002-5028870 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 7-133 |
| Cow position: | chr5:9859132-9859258 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 31, 48 |
| Conread position: | 7-145 |
| Cow position: | chr5:59872791-59872929 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 28, 48 |
| Conread position: | 8-131 |
| Cow position: | chr5:49259745-49259866 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 103, 45 |
| Conread position: | 8-145 |
| Cow position: | chr5:40559920-40559782 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 73, 46 |
| Conread position: | 9-118 |
| Cow position: | chr5:33273941-33273832 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 93 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 22, 47 |
| Conread position: | 12-130 |
| Cow position: | chr5:13392879-13392759 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 13, 45 |
| Conread position: | 13-153 |
| Cow position: | chr5:26728475-26728337 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 19, 27 |
| Conread position: | 17-144 |
| Cow position: | chr5:36251450-36251325 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 18-122 |
| Cow position: | chr5:44868170-44868272 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 87 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 18-127 |
| Cow position: | chr5:45272980-45273088 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 91 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 23, 31 |
| Conread position: | 18-130 |
| Cow position: | chr5:26725960-26726071 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 90 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 18-132 |
| Cow position: | chr5:43992582-43992470 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 18-137 |
| Cow position: | chr5:44874455-44874337 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 96, 37 |
| Conread position: | 18-145 |
| Cow position: | chr5:52268067-52268193 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 18-145 |
| Cow position: | chr5:61811450-61811322 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 107 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 18, 37 |
| Conread position: | 20-251 |
| Cow position: | chr5:54060575-54060337 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 18, 33 |
| Conread position: | 22-138 |
| Cow position: | chr5:31434533-31434419 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 14, 34 |
| Conread position: | 22-142 |
| Cow position: | chr5:24136964-24136844 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 100 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 14, 33 |
| Conread position: | 23-144 |
| Cow position: | chr5:29860601-29860481 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 23-145 |
| Cow position: | chr5:5705421-5705299 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 90, 29 |
| Conread position: | 25-126 |
| Cow position: | chr5:25531454-25531354 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 88 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 25-130 |
| Cow position: | chr5:52887032-52887136 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 87 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 25-136 |
| Cow position: | chr5:28324587-28324477 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 11, 30 |
| Conread position: | 25-154 |
| Cow position: | chr5:40640228-40640099 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 11, 30 |
| Conread position: | 33-145 |
| Cow position: | chr5:59470919-59470807 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 91 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 16, 22 |
| Conread position: | 34-137 |
| Cow position: | chr5:9435701-9435803 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 88 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 37-144 |
| Cow position: | chr5:63991660-63991766 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 87 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 54-145 |
| Cow position: | chr5:55130177-55130086 (view UCSC Genome Browser custom track) |
| Alignm length: | 92 |
| Alignm identity: | 81 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.