Cow genome map
| Conread name: | rton1219b_i23.y1 |
| Conread position: | 1-129 |
| Cow position: | chrX:11195037-11194906 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 1-130 |
| Cow position: | chrX:33740713-33740580 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 25, 56 |
| Conread position: | 1-134 |
| Cow position: | chrX:16348301-16348434 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 35, 52 |
| Conread position: | 1-143 |
| Cow position: | chrX:47101037-47101179 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 35, 55 |
| Conread position: | 1-145 |
| Cow position: | chrX:42482536-42482681 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 37, 54 |
| Conread position: | 2-142 |
| Cow position: | chrX:41270716-41270855 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 3-122 |
| Cow position: | chrX:40480598-40480716 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 3-142 |
| Cow position: | chrX:23575046-23574911 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 3-144 |
| Cow position: | chrX:27682947-27682807 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 112, 51 |
| Conread position: | 3-145 |
| Cow position: | chrX:2742053-2742191 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 3-145 |
| Cow position: | chrX:23187297-23187439 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 33, 53 |
| Conread position: | 3-145 |
| Cow position: | chrX:40580356-40580497 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 3-152 |
| Cow position: | chrX:18046688-18046539 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 33, 53 |
| Conread position: | 4-114 |
| Cow position: | chrX:25815650-25815759 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 90 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 4-124 |
| Cow position: | chrX:43014410-43014530 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 32, 51 |
| Conread position: | 5-133 |
| Cow position: | chrX:25282764-25282893 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 27, 52 |
| Conread position: | 6-136 |
| Cow position: | chrX:11084792-11084920 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 7-145 |
| Cow position: | chrX:20743897-20743761 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 89, 46 |
| Conread position: | 9-139 |
| Cow position: | chrX:39938293-39938424 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 29, 46 |
| Conread position: | 10-138 |
| Cow position: | chrX:19096949-19097077 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 22, 46 |
| Conread position: | 12-136 |
| Cow position: | chrX:37129539-37129416 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 12-145 |
| Cow position: | chrX:11582540-11582408 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 12-145 |
| Cow position: | chrX:23265189-23265322 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 24, 47 |
| Conread position: | 13-145 |
| Cow position: | chrX:38226524-38226656 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 26, 40 |
| Conread position: | 14-124 |
| Cow position: | chrX:32796967-32797077 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 93 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 18, 43 |
| Conread position: | 18-135 |
| Cow position: | chrX:15545415-15545532 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 18, 37 |
| Conread position: | 18-139 |
| Cow position: | chrX:11501132-11501013 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 18, 37 |
| Conread position: | 18-252 |
| Cow position: | chrX:11717488-11717722 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 18, 37 |
| Conread position: | 19-134 |
| Cow position: | chrX:12255071-12255182 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 19-134 |
| Cow position: | chrX:33865062-33865177 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 19, 36 |
| Conread position: | 19-251 |
| Cow position: | chrX:33151690-33151921 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 17, 36 |
| Conread position: | 20-126 |
| Cow position: | chrX:23182733-23182839 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 92 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 19, 33 |
| Conread position: | 20-128 |
| Cow position: | chrX:42164645-42164538 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 87 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 20-143 |
| Cow position: | chrX:23562900-23562778 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 16, 36 |
| Conread position: | 20-160 |
| Cow position: | chrX:36069471-36069332 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 18, 33 |
| Conread position: | 22-128 |
| Cow position: | chrX:37062336-37062441 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 87 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 22-136 |
| Cow position: | chrX:616007-616121 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 14, 33 |
| Conread position: | 23-134 |
| Cow position: | chrX:32572877-32572987 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 89 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 24-137 |
| Cow position: | chrX:35848977-35848863 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 12, 34 |
| Conread position: | 24-144 |
| Cow position: | chrX:47123279-47123159 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 11, 24 |
| Conread position: | 24-145 |
| Cow position: | chrX:27516800-27516680 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 25-133 |
| Cow position: | chrX:27689340-27689232 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 93 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 13, 30 |
| Conread position: | 26-128 |
| Cow position: | chrX:40531798-40531900 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 86 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 10, 29 |
| Conread position: | 26-138 |
| Cow position: | chrX:27185817-27185705 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 10, 29 |
| Conread position: | 27-145 |
| Cow position: | chrX:7910846-7910965 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 9, 15 |
| Conread position: | 34-146 |
| Cow position: | chrX:23574907-23574794 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 58, 20 |
| Conread position: | 34-149 |
| Cow position: | chrX:29328034-29327920 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 20, 0 |
Show alignments to all cow chromosomes.