Cow genome map

Conread name: rton1227b_p6.y1

Conread position: 97-281
Cow position: chr20:20056518-20056338 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 138
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 87, 52

Conread position: 102-283
Cow position: chr20:28594254-28594437 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 134
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 66, 48

Conread position: 103-284
Cow position: chr20:16548305-16548127 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 127
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 36, 0

Conread position: 112-279
Cow position: chr20:35741747-35741914 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 118
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 114-262
Cow position: chr20:34001409-34001261 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 109
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 39, 131

Conread position: 114-266
Cow position: chr20:17765345-17765198 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 112
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 26, 0

Conread position: 114-276
Cow position: chr20:23506486-23506326 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 152, 31

Conread position: 114-280
Cow position: chr20:9376452-9376616 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 118
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 36, 0

Conread position: 114-280
Cow position: chr20:10772187-10772352 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 122
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 114, 0

Conread position: 114-280
Cow position: chr20:11359646-11359485 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 123
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 30, 0

Conread position: 114-281
Cow position: chr20:5078607-5078775 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 125
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 31, 0

Conread position: 114-281
Cow position: chr20:8578231-8578397 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 120
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 19, 0

Conread position: 114-281
Cow position: chr20:12581973-12581806 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 119
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 114-281
Cow position: chr20:21428143-21428307 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 124
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 72, 41

Conread position: 114-281
Cow position: chr20:21928889-21929053 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 127
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 19, 0

Conread position: 114-281
Cow position: chr20:33976465-33976629 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 123
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 41, 108

Conread position: 114-281
Cow position: chr20:40423119-40422955 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 124
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 97, 27

Conread position: 114-281
Cow position: chr20:40511775-40511608 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 126
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 39, 56

Conread position: 114-282
Cow position: chr20:10200326-10200495 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 42, 0

Conread position: 114-282
Cow position: chr20:11482151-11481986 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 120
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 36, 0

Conread position: 114-284
Cow position: chr20:3599411-3599247 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 140, 29

Conread position: 114-284
Cow position: chr20:5636467-5636632 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 121
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 114-284
Cow position: chr20:5644770-5644938 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 123
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 30, 106

Conread position: 114-284
Cow position: chr20:6054532-6054358 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 124
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 28, 0

Conread position: 114-284
Cow position: chr20:7709802-7709630 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 122
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 26, 58

Conread position: 114-284
Cow position: chr20:9267124-9266956 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 128
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 43, 124

Conread position: 114-284
Cow position: chr20:12126321-12126153 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 129
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 19, 0

Conread position: 114-284
Cow position: chr20:13025632-13025459 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 131
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 108, 41

Conread position: 114-284
Cow position: chr20:14980529-14980355 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 39, 164

Conread position: 114-284
Cow position: chr20:16941307-16941137 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 129
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 31, 84

Conread position: 114-284
Cow position: chr20:17251699-17251868 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 132
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 30, 38

Conread position: 114-284
Cow position: chr20:18392277-18392120 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 129
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 36, 0

Conread position: 114-284
Cow position: chr20:21345411-21345584 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 128
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 78, 41

Conread position: 114-284
Cow position: chr20:22484846-22485010 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 131
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 24, 0

Conread position: 114-284
Cow position: chr20:24711819-24711992 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 124
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 35, 0

Conread position: 114-284
Cow position: chr20:29805678-29805508 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 125
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 39, 133

Conread position: 114-284
Cow position: chr20:33067382-33067209 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 122
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 41, 26

Conread position: 114-284
Cow position: chr20:34097974-34097802 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 124
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 73, 41

Conread position: 114-284
Cow position: chr20:34108095-34108256 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 128
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 31, 0

Conread position: 114-284
Cow position: chr20:34777163-34777331 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 132
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 36, 0

Conread position: 118-276
Cow position: chr20:33363502-33363661 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 114
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 118-283
Cow position: chr20:23064843-23064685 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 122
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 32, 0

Conread position: 120-284
Cow position: chr20:2169734-2169572 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 52, 0

Conread position: 120-284
Cow position: chr20:40157890-40158051 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 24, 0

Conread position: 121-258
Cow position: chr20:37165704-37165835 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 109
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 24, 0

Conread position: 121-279
Cow position: chr20:17845948-17846105 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 122
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 25, 72

Conread position: 121-281
Cow position: chr20:30119580-30119429 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 121-284
Cow position: chr20:6096503-6096344 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 132
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 31, 0

Conread position: 121-284
Cow position: chr20:6240531-6240370 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 119
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 30, 0

Conread position: 121-284
Cow position: chr20:11008159-11008321 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 117
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 24, 0

Conread position: 121-284
Cow position: chr20:13652376-13652216 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 125
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 28, 0

Conread position: 121-284
Cow position: chr20:15565835-15565678 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 124
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 27, 0

Conread position: 121-284
Cow position: chr20:19751298-19751458 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 127
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 19, 0

Conread position: 121-284
Cow position: chr20:21372297-21372459 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 121
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 24, 0

Conread position: 121-284
Cow position: chr20:23870830-23870668 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 121
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 36, 24

Conread position: 121-284
Cow position: chr20:24902308-24902142 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 118
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 31, 0

Conread position: 122-277
Cow position: chr20:30710647-30710491 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 120
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 57, 23

Conread position: 122-281
Cow position: chr20:14620316-14620153 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 118
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 27, 0

Conread position: 122-284
Cow position: chr20:580932-580769 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 120
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 33, 0

Conread position: 122-284
Cow position: chr20:4945257-4945103 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 120
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 23, 0

Conread position: 122-284
Cow position: chr20:9433577-9433738 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 122
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 24, 0

Conread position: 122-284
Cow position: chr20:20967310-20967472 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 121
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 122-284
Cow position: chr20:31323778-31323938 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 115
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 33, 0

Conread position: 123-284
Cow position: chr20:12996018-12995855 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 32, 117

Conread position: 125-283
Cow position: chr20:11135768-11135603 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 124
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 102, 32

Conread position: 125-284
Cow position: chr20:4334535-4334378 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 131
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 143, 15

Conread position: 125-284
Cow position: chr20:6603034-6603192 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 28, 63

Conread position: 125-284
Cow position: chr20:40692051-40692215 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 123
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 44, 8

Conread position: 126-284
Cow position: chr20:29845045-29845201 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 127
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 27, 14

Conread position: 131-280
Cow position: chr20:8817491-8817344 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 108
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 132-284
Cow position: chr20:35591651-35591498 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 113
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 13, 76

Conread position: 133-284
Cow position: chr20:20898589-20898439 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 115
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 22, 0

Conread position: 133-284
Cow position: chr20:39016874-39016721 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 111
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 45, 0

Conread position: 137-283
Cow position: chr20:33438975-33438830 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 113
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 19, 0

Conread position: 138-284
Cow position: chr20:26077663-26077517 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 106
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 140-284
Cow position: chr20:14759658-14759514 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 109
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 140-284
Cow position: chr20:20983999-20984143 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 113
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 141-284
Cow position: chr20:4002105-4002245 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 24, 0

Conread position: 142-283
Cow position: chr20:33532311-33532453 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 105
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 22, 0

Conread position: 143-281
Cow position: chr20:14917296-14917433 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 103
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 8, 0

Conread position: 145-284
Cow position: chr20:354884-354750 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 105
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 10, 0

Conread position: 146-283
Cow position: chr20:311339-311470 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 107
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 69, 0

Conread position: 151-281
Cow position: chr20:34202652-34202783 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 99
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 17, 0

Conread position: 151-284
Cow position: chr20:5364948-5365077 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 55, 0

Conread position: 151-284
Cow position: chr20:23678699-23678564 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 113
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 77, 0

Conread position: 152-277
Cow position: chr20:36779710-36779585 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 95
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 152-281
Cow position: chr20:15822569-15822694 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 106
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 19, 28

Conread position: 152-284
Cow position: chr20:42458837-42458705 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 99
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 153-284
Cow position: chr20:5703491-5703623 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 101
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 84, 0

Conread position: 153-284
Cow position: chr20:40781981-40782112 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 100
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 155-284
Cow position: chr20:22959324-22959197 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 106
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 17, 0

Conread position: 157-284
Cow position: chr20:28899118-28899251 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 102
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 175-284
Cow position: chr20:7622939-7622832 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 88
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 62, 0

Conread position: 179-284
Cow position: chr20:6053422-6053317 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 86
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 185-284
Cow position: chr20:18395977-18396076 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 81
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 199-284
Cow position: chr20:15515374-15515289 (view UCSC Genome Browser custom track)
Alignm length: 86
Alignm identity: 74
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.