Cow genome map

Conread name: rton1227b_p6.y1

Conread position: 105-282
Cow position: chr29:43544671-43544499 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 136
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 16, 0

Conread position: 114-275
Cow position: chr29:24624185-24624345 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 120
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 25, 44

Conread position: 114-280
Cow position: chr29:19821226-19821385 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 121
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 31, 0

Conread position: 114-281
Cow position: chr29:11397985-11397823 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 123
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 32, 0

Conread position: 114-283
Cow position: chr29:4520274-4520439 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 127
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 30, 94

Conread position: 114-283
Cow position: chr29:17222352-17222519 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 122
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 159, 19

Conread position: 114-283
Cow position: chr29:24292809-24292974 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 125
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 149, 26

Conread position: 114-284
Cow position: chr29:356258-356427 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 123
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 43, 0

Conread position: 114-284
Cow position: chr29:2055997-2056167 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 119
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 39, 19

Conread position: 114-284
Cow position: chr29:2263054-2262889 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 128
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 31, 0

Conread position: 114-284
Cow position: chr29:6015061-6015232 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 134
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 31, 37

Conread position: 114-284
Cow position: chr29:8004984-8004821 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 126
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 26, 0

Conread position: 114-284
Cow position: chr29:11647028-11647200 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 129
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 34, 63

Conread position: 114-284
Cow position: chr29:13028376-13028546 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 130
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 26, 96

Conread position: 114-284
Cow position: chr29:13373238-13373407 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 130
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 98, 31

Conread position: 114-284
Cow position: chr29:16195781-16195946 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 121
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 31, 0

Conread position: 114-284
Cow position: chr29:19428598-19428766 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 132
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 111, 26

Conread position: 114-284
Cow position: chr29:22519191-22519021 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 125
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 28, 42

Conread position: 114-284
Cow position: chr29:22778238-22778067 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 127
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 139, 30

Conread position: 114-284
Cow position: chr29:22936209-22936377 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 127
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 139, 30

Conread position: 114-284
Cow position: chr29:23825607-23825779 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 125
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 89, 31

Conread position: 114-284
Cow position: chr29:28195574-28195415 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 129
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 29, 0

Conread position: 114-284
Cow position: chr29:29057118-29057281 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 127
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 31, 0

Conread position: 114-284
Cow position: chr29:31928924-31929093 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 132
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 25, 43

Conread position: 114-284
Cow position: chr29:32799769-32799606 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 125
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 63, 0

Conread position: 114-284
Cow position: chr29:35292027-35292199 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 123
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 30, 43

Conread position: 114-284
Cow position: chr29:37618240-37618412 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 127
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 19, 33

Conread position: 114-284
Cow position: chr29:41530786-41530955 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 128
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 156, 0

Conread position: 115-284
Cow position: chr29:749970-749801 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 129
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 38, 121

Conread position: 116-283
Cow position: chr29:27911533-27911695 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 122
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 23, 0

Conread position: 116-283
Cow position: chr29:27926716-27926878 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 121
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 29, 0

Conread position: 118-244
Cow position: chr29:36183224-36183347 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 97
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 27, 0

Conread position: 120-283
Cow position: chr29:13639426-13639261 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 128
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 24, 0

Conread position: 120-283
Cow position: chr29:28775515-28775358 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 124
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 30, 0

Conread position: 120-284
Cow position: chr29:43251224-43251059 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 121
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 134, 35

Conread position: 121-281
Cow position: chr29:11434068-11434222 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 12, 0

Conread position: 121-281
Cow position: chr29:26416297-26416454 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 120
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 32, 71

Conread position: 121-282
Cow position: chr29:9912118-9912279 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 116
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 32, 147

Conread position: 121-282
Cow position: chr29:40852875-40853032 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 120
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 17, 0

Conread position: 121-284
Cow position: chr29:1022241-1022401 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 118
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 22, 0

Conread position: 121-284
Cow position: chr29:7103501-7103664 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 121
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 121-284
Cow position: chr29:12025524-12025370 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 122
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 21, 35

Conread position: 121-284
Cow position: chr29:28993806-28993968 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 124
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 56, 16

Conread position: 122-281
Cow position: chr29:12626032-12625873 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 122
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 122-284
Cow position: chr29:13867265-13867104 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 123
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 53, 33

Conread position: 122-284
Cow position: chr29:40994943-40994785 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 124
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 22, 0

Conread position: 125-280
Cow position: chr29:18012504-18012660 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 111
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 16, 0

Conread position: 125-282
Cow position: chr29:8862528-8862377 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 73, 25

Conread position: 125-283
Cow position: chr29:24578809-24578968 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 115
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 30, 0

Conread position: 125-284
Cow position: chr29:38580927-38581085 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 123
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 23, 32

Conread position: 126-280
Cow position: chr29:11053908-11053758 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 23, 0

Conread position: 127-277
Cow position: chr29:38858263-38858114 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 108
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 6, 0

Conread position: 127-283
Cow position: chr29:35084274-35084117 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 111
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 28, 0

Conread position: 128-284
Cow position: chr29:27819171-27819324 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 116
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 17, 0

Conread position: 129-280
Cow position: chr29:32290562-32290711 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 113
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 21, 0

Conread position: 131-282
Cow position: chr29:5210447-5210595 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 121
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 19, 0

Conread position: 131-283
Cow position: chr29:21196699-21196544 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 114
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 18, 13

Conread position: 133-281
Cow position: chr29:30918505-30918652 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 113
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 8, 0

Conread position: 134-279
Cow position: chr29:28868595-28868744 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 79, 0

Conread position: 136-280
Cow position: chr29:8686287-8686432 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 111
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 7, 0

Conread position: 136-284
Cow position: chr29:1229564-1229713 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 117
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 18, 40

Conread position: 136-284
Cow position: chr29:42886504-42886649 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 112
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 9, 0

Conread position: 138-284
Cow position: chr29:27873559-27873707 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 113
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 10, 0

Conread position: 139-281
Cow position: chr29:17154741-17154881 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 112
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 16, 0

Conread position: 141-281
Cow position: chr29:1325407-1325542 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 106
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 15, 0

Conread position: 141-281
Cow position: chr29:35501689-35501550 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 134, 9

Conread position: 141-284
Cow position: chr29:6844669-6844526 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 68, 41

Conread position: 141-284
Cow position: chr29:22175647-22175787 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 112
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 23, 0

Conread position: 141-284
Cow position: chr29:25333496-25333355 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 107
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 76, 0

Conread position: 145-284
Cow position: chr29:31981799-31981937 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 110
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 10, 0

Conread position: 146-283
Cow position: chr29:13372632-13372768 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 101
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 123, 0

Conread position: 146-283
Cow position: chr29:24188097-24187960 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 102
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 146-283
Cow position: chr29:25088714-25088848 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 107
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 41, 0

Conread position: 146-284
Cow position: chr29:40791278-40791409 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 106
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 60, 0

Conread position: 150-284
Cow position: chr29:5789001-5789134 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 75, 0

Conread position: 151-283
Cow position: chr29:34359848-34359716 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 105
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 12, 38

Conread position: 151-284
Cow position: chr29:4423466-4423333 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 104
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 151-284
Cow position: chr29:28979526-28979396 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 7, 56

Conread position: 152-274
Cow position: chr29:19559045-19558923 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 152-281
Cow position: chr29:396387-396509 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 100
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 54, 0

Conread position: 152-283
Cow position: chr29:17409309-17409440 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 97
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 0, 0

Conread position: 152-284
Cow position: chr29:5520511-5520379 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 98
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 152-284
Cow position: chr29:31934353-31934485 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 152-284
Cow position: chr29:40299046-40298914 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 154-280
Cow position: chr29:29512164-29512038 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 96
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 161-283
Cow position: chr29:24051398-24051277 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 94
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 76, 0

Conread position: 169-284
Cow position: chr29:16672482-16672596 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 91
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 106, 0

Conread position: 171-284
Cow position: chr29:19244466-19244353 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 92
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 175-280
Cow position: chr29:43088308-43088410 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 86
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 37, 0

Conread position: 176-284
Cow position: chr29:629536-629644 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 90
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 190-281
Cow position: chr29:8799003-8798912 (view UCSC Genome Browser custom track)
Alignm length: 92
Alignm identity: 77
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 0, 0

Conread position: 190-284
Cow position: chr29:33393690-33393784 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 80
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.