Cow genome map
| Conread name: | rtra01_e11r1.y1 |
| Conread position: | 1-185 |
| Cow position: | chr10:21424611-21424795 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 137, 59 |
| Conread position: | 1-196 |
| Cow position: | chr10:30741447-30741250 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 57, 25 |
| Conread position: | 1-230 |
| Cow position: | chr10:11497289-11497068 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 80, 58 |
| Conread position: | 1-235 |
| Cow position: | chr10:29689264-29689503 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 57, 178 |
| Conread position: | 1-241 |
| Cow position: | chr10:23135379-23135138 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 139, 59 |
| Conread position: | 1-269 |
| Cow position: | chr10:27538570-27538292 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 57, 105 |
| Conread position: | 1-275 |
| Cow position: | chr10:41771103-41771394 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 214 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 59, 21 |
| Conread position: | 1-294 |
| Cow position: | chr10:6038271-6038583 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 221 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 136, 45 |
| Conread position: | 1-294 |
| Cow position: | chr10:15391558-15391267 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 57, 12 |
| Conread position: | 1-294 |
| Cow position: | chr10:45606364-45606676 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 233 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 95, 10 |
| Conread position: | 1-312 |
| Cow position: | chr10:8412983-8413320 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 57, 104 |
| Conread position: | 1-316 |
| Cow position: | chr10:19590694-19591038 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 250 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 32, 114 |
| Conread position: | 1-317 |
| Cow position: | chr10:48255156-48255498 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 250 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 33, 201 |
| Conread position: | 1-318 |
| Cow position: | chr10:25293855-25293515 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 57, 107 |
| Conread position: | 1-325 |
| Cow position: | chr10:65072048-65072393 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 242 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 1-327 |
| Cow position: | chr10:2407063-2407393 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 104 |
| Conread position: | 1-327 |
| Cow position: | chr10:58608170-58607824 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 241 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 24, 19 |
| Conread position: | 1-329 |
| Cow position: | chr10:8077093-8077439 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 187 |
| Conread position: | 1-330 |
| Cow position: | chr10:35975609-35975272 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 137, 34 |
| Conread position: | 1-330 |
| Cow position: | chr10:41984819-41985175 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 196 |
| Conread position: | 1-330 |
| Cow position: | chr10:62516950-62516587 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 260 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 57, 118 |
| Conread position: | 1-332 |
| Cow position: | chr10:33002190-33002529 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 246 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 13, 61 |
| Conread position: | 1-333 |
| Cow position: | chr10:19704445-19704794 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 112 |
| Conread position: | 1-333 |
| Cow position: | chr10:31855403-31855042 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 266 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 59, 16 |
| Conread position: | 1-338 |
| Cow position: | chr10:6011984-6012331 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 250 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 53, 58 |
| Conread position: | 1-339 |
| Cow position: | chr10:10124411-10124045 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 264 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 79, 199 |
| Conread position: | 1-342 |
| Cow position: | chr10:58746181-58746526 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 259 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 55, 94 |
| Conread position: | 1-351 |
| Cow position: | chr10:16649862-16650228 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 53 |
| Conread position: | 2-334 |
| Cow position: | chr10:22843753-22843390 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 250 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 17, 37 |
| Conread position: | 3-312 |
| Cow position: | chr10:17863652-17863314 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 3-338 |
| Cow position: | chr10:69544281-69544624 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 57 |
| Conread position: | 3-342 |
| Cow position: | chr10:24786173-24785806 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 267 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 59, 19 |
| Conread position: | 4-237 |
| Cow position: | chr10:22977615-22977854 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 120, 27 |
| Conread position: | 4-327 |
| Cow position: | chr10:23948854-23949206 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 219 |
| Conread position: | 4-327 |
| Cow position: | chr10:30449998-30450342 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 243 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 53, 279 |
| Conread position: | 5-273 |
| Cow position: | chr10:41060247-41060519 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 144, 14 |
| Conread position: | 5-339 |
| Cow position: | chr10:35862163-35862527 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 29, 201 |
| Conread position: | 5-353 |
| Cow position: | chr10:7328774-7328419 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 114 |
| Conread position: | 6-178 |
| Cow position: | chr10:15874012-15874187 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 49, 74 |
| Conread position: | 6-329 |
| Cow position: | chr10:24022219-24022565 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 52, 295 |
| Conread position: | 10-319 |
| Cow position: | chr10:8760101-8760401 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 15, 9 |
| Conread position: | 10-319 |
| Cow position: | chr10:20109887-20110208 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 128, 48 |
| Conread position: | 10-330 |
| Cow position: | chr10:3115540-3115200 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 232 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 50, 111 |
| Conread position: | 10-336 |
| Cow position: | chr10:42755382-42755041 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 246 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 53, 147 |
| Conread position: | 11-319 |
| Cow position: | chr10:38155513-38155180 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 51, 90 |
| Conread position: | 15-344 |
| Cow position: | chr10:1328135-1328470 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 234 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 14, 30 |
| Conread position: | 23-302 |
| Cow position: | chr10:67020669-67020370 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 12, 176 |
| Conread position: | 24-330 |
| Cow position: | chr10:26673106-26672809 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 36, 79 |
| Conread position: | 25-283 |
| Cow position: | chr10:57563926-57563647 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 199 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 113, 35 |
| Conread position: | 26-310 |
| Cow position: | chr10:14787507-14787804 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 223 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 36, 161 |
| Conread position: | 26-324 |
| Cow position: | chr10:28950110-28949819 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 31, 95 |
| Conread position: | 28-330 |
| Cow position: | chr10:23886419-23886733 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 29, 86 |
| Conread position: | 39-327 |
| Cow position: | chr10:61305293-61304997 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 214 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 19, 128 |
| Conread position: | 57-330 |
| Cow position: | chr10:60358736-60358446 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 216 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 58-326 |
| Cow position: | chr10:49680046-49679761 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 54, 110 |
| Conread position: | 59-304 |
| Cow position: | chr10:40645931-40645675 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 72, 59 |
| Conread position: | 59-330 |
| Cow position: | chr10:36231983-36231699 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 79, 59 |
| Conread position: | 60-317 |
| Cow position: | chr10:47493203-47493480 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 78, 133 |
| Conread position: | 66-330 |
| Cow position: | chr10:11217600-11217325 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 55, 105 |
| Conread position: | 129-317 |
| Cow position: | chr10:56705671-56705859 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 75, 52 |
| Conread position: | 135-306 |
| Cow position: | chr10:6490853-6491036 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 69, 53 |
| Conread position: | 135-323 |
| Cow position: | chr10:11032582-11032778 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 69, 46 |
| Conread position: | 135-327 |
| Cow position: | chr10:15618896-15619092 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 70, 46 |
| Conread position: | 135-330 |
| Cow position: | chr10:4994652-4994843 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 68, 32 |
| Conread position: | 135-330 |
| Cow position: | chr10:62353376-62353178 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 72, 39 |
| Conread position: | 135-330 |
| Cow position: | chr10:65130749-65130950 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 69, 46 |
| Conread position: | 135-338 |
| Cow position: | chr10:9341820-9342033 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 69, 46 |
| Conread position: | 135-338 |
| Cow position: | chr10:19284447-19284659 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 69, 46 |
| Conread position: | 135-338 |
| Cow position: | chr10:61588349-61588557 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 69, 28 |
| Conread position: | 135-352 |
| Cow position: | chr10:25479015-25478795 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 69, 46 |
| Conread position: | 135-354 |
| Cow position: | chr10:51779125-51779341 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 101, 31 |
| Conread position: | 136-330 |
| Cow position: | chr10:46491127-46491317 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 151, 45 |
| Conread position: | 138-296 |
| Cow position: | chr10:20517178-20517012 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 66, 43 |
| Conread position: | 139-313 |
| Cow position: | chr10:59153744-59153906 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 139-318 |
| Cow position: | chr10:24755516-24755701 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 65, 34 |
| Conread position: | 140-342 |
| Cow position: | chr10:29360814-29360609 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 96, 27 |
| Conread position: | 141-330 |
| Cow position: | chr10:35820703-35820901 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 63, 26 |
| Conread position: | 144-319 |
| Cow position: | chr10:25936146-25935966 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 29, 23 |
| Conread position: | 144-327 |
| Cow position: | chr10:42459429-42459621 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 60, 37 |
| Conread position: | 146-330 |
| Cow position: | chr10:69698886-69698696 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 58, 22 |
| Conread position: | 154-338 |
| Cow position: | chr10:19394689-19394878 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 50, 13 |
| Conread position: | 158-330 |
| Cow position: | chr10:33915170-33915339 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 129, 7 |
Show alignments to all cow chromosomes.