Cow genome map
| Conread name: | rtra01_e11r1.y1 |
| Conread position: | 1-158 |
| Cow position: | chr11:45890033-45889880 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 137, 59 |
| Conread position: | 1-188 |
| Cow position: | chr11:54244747-54244557 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 59, 34 |
| Conread position: | 1-204 |
| Cow position: | chr11:47565863-47566069 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 57, 105 |
| Conread position: | 1-237 |
| Cow position: | chr11:52832647-52832886 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 49, 96 |
| Conread position: | 1-298 |
| Cow position: | chr11:67236474-67236160 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 43, 61 |
| Conread position: | 1-313 |
| Cow position: | chr11:32438877-32439214 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 248 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 59, 202 |
| Conread position: | 1-316 |
| Cow position: | chr11:38009752-38010080 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 244 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 116, 61 |
| Conread position: | 1-319 |
| Cow position: | chr11:16001000-16000657 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 257 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 17, 59 |
| Conread position: | 1-319 |
| Cow position: | chr11:20491642-20491302 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 252 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 59, 34 |
| Conread position: | 1-319 |
| Cow position: | chr11:47193588-47193252 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 189 |
| Conread position: | 1-327 |
| Cow position: | chr11:1668744-1668395 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 190 |
| Conread position: | 1-327 |
| Cow position: | chr11:14941536-14941867 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 130, 163 |
| Conread position: | 1-327 |
| Cow position: | chr11:42519807-42519465 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 252 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 134, 8 |
| Conread position: | 1-327 |
| Cow position: | chr11:46705467-46705802 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 251 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 133, 58 |
| Conread position: | 1-333 |
| Cow position: | chr11:26256337-26256681 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 242 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 18, 24 |
| Conread position: | 1-333 |
| Cow position: | chr11:84795675-84796008 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 246 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 59, 104 |
| Conread position: | 1-336 |
| Cow position: | chr11:11752442-11752807 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 264 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 32, 203 |
| Conread position: | 1-352 |
| Cow position: | chr11:46413647-46413275 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 198 |
| Conread position: | 2-189 |
| Cow position: | chr11:62215119-62215321 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 2-269 |
| Cow position: | chr11:16232861-16233148 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 2-319 |
| Cow position: | chr11:41272211-41271866 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 32, 84 |
| Conread position: | 2-324 |
| Cow position: | chr11:61845950-61846282 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 235 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 17, 55 |
| Conread position: | 2-328 |
| Cow position: | chr11:43646338-43646697 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 253 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 32, 300 |
| Conread position: | 2-338 |
| Cow position: | chr11:35919727-35920067 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 243 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 17, 30 |
| Conread position: | 2-338 |
| Cow position: | chr11:61427666-61427322 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 25 |
| Conread position: | 2-368 |
| Cow position: | chr11:29802518-29802880 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 22 |
| Conread position: | 3-230 |
| Cow position: | chr11:50953491-50953722 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 55, 207 |
| Conread position: | 3-319 |
| Cow position: | chr11:50951628-50951279 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 7 |
| Conread position: | 3-329 |
| Cow position: | chr11:20602299-20601958 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 51, 180 |
| Conread position: | 3-353 |
| Cow position: | chr11:13039104-13039433 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 236 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 201, 55 |
| Conread position: | 4-312 |
| Cow position: | chr11:44815577-44815265 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 52, 97 |
| Conread position: | 4-321 |
| Cow position: | chr11:75255476-75255166 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 200, 56 |
| Conread position: | 4-327 |
| Cow position: | chr11:14308710-14308359 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 250 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 4-333 |
| Cow position: | chr11:56892888-56892532 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 255 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 134, 56 |
| Conread position: | 4-376 |
| Cow position: | chr11:67745392-67744994 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 272 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 134, 56 |
| Conread position: | 5-328 |
| Cow position: | chr11:36987020-36986681 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 29, 151 |
| Conread position: | 5-330 |
| Cow position: | chr11:18698950-18698592 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 245 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 6-137 |
| Cow position: | chr11:11785401-11785269 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 52, 108 |
| Conread position: | 6-319 |
| Cow position: | chr11:65444773-65445102 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 6-320 |
| Cow position: | chr11:5648813-5648491 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 54, 68 |
| Conread position: | 10-313 |
| Cow position: | chr11:11460540-11460232 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 52, 176 |
| Conread position: | 10-331 |
| Cow position: | chr11:63508479-63508157 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 84 |
| Conread position: | 10-348 |
| Cow position: | chr11:38845197-38845562 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 45, 98 |
| Conread position: | 11-318 |
| Cow position: | chr11:53313508-53313839 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 74 |
| Conread position: | 11-332 |
| Cow position: | chr11:53262830-53262486 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 66, 49 |
| Conread position: | 21-302 |
| Cow position: | chr11:76395826-76395527 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 93, 38 |
| Conread position: | 24-330 |
| Cow position: | chr11:17321698-17321379 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 10, 17 |
| Conread position: | 24-339 |
| Cow position: | chr11:33103605-33103927 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 33, 86 |
| Conread position: | 25-332 |
| Cow position: | chr11:42083519-42083199 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 9, 28 |
| Conread position: | 28-330 |
| Cow position: | chr11:44153090-44153416 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 32, 191 |
| Conread position: | 29-275 |
| Cow position: | chr11:70422549-70422793 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 25, 74 |
| Conread position: | 31-330 |
| Cow position: | chr11:7315105-7315409 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 27, 85 |
| Conread position: | 35-316 |
| Cow position: | chr11:49216825-49216526 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 22, 70 |
| Conread position: | 37-317 |
| Cow position: | chr11:23258603-23258898 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 79, 177 |
| Conread position: | 40-298 |
| Cow position: | chr11:19269049-19269317 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 18, 10 |
| Conread position: | 57-343 |
| Cow position: | chr11:60512780-60512489 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 215 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 147, 35 |
| Conread position: | 59-330 |
| Cow position: | chr11:40485921-40486214 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 79, 233 |
| Conread position: | 129-330 |
| Cow position: | chr11:40250676-40250883 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 69, 52 |
| Conread position: | 133-329 |
| Cow position: | chr11:29947010-29947208 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 110, 32 |
| Conread position: | 135-293 |
| Cow position: | chr11:7705557-7705403 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 69, 46 |
| Conread position: | 135-314 |
| Cow position: | chr11:57061797-57061610 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 69, 46 |
| Conread position: | 135-320 |
| Cow position: | chr11:58313156-58312968 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 47, 61 |
| Conread position: | 135-327 |
| Cow position: | chr11:73473851-73474053 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 69, 46 |
| Conread position: | 135-327 |
| Cow position: | chr11:81614718-81614911 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 69, 32 |
| Conread position: | 135-329 |
| Cow position: | chr11:62019674-62019880 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 69, 45 |
| Conread position: | 135-330 |
| Cow position: | chr11:56796823-56797021 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 74, 52 |
| Conread position: | 135-336 |
| Cow position: | chr11:57047051-57047253 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 68, 46 |
| Conread position: | 135-338 |
| Cow position: | chr11:8232650-8232853 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 69, 17 |
| Conread position: | 135-338 |
| Cow position: | chr11:18572720-18572511 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 69, 33 |
| Conread position: | 135-338 |
| Cow position: | chr11:65430978-65430772 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 31, 38 |
| Conread position: | 135-339 |
| Cow position: | chr11:10877158-10876947 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 69, 46 |
| Conread position: | 135-339 |
| Cow position: | chr11:34023790-34023572 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 135-339 |
| Cow position: | chr11:46399044-46398837 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 69, 40 |
| Conread position: | 135-342 |
| Cow position: | chr11:58614581-58614367 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 69, 46 |
| Conread position: | 137-317 |
| Cow position: | chr11:36496760-36496584 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 67, 29 |
| Conread position: | 137-330 |
| Cow position: | chr11:9253101-9253304 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 34, 19 |
| Conread position: | 138-343 |
| Cow position: | chr11:57111391-57111602 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 44, 26 |
| Conread position: | 139-330 |
| Cow position: | chr11:28691844-28692034 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 71, 26 |
| Conread position: | 141-379 |
| Cow position: | chr11:42016720-42016974 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 63, 24 |
| Conread position: | 144-329 |
| Cow position: | chr11:2788292-2788098 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 60, 23 |
| Conread position: | 148-379 |
| Cow position: | chr11:55117388-55117135 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 34, 19 |
| Conread position: | 149-350 |
| Cow position: | chr11:46451520-46451311 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 24, 40 |
Show alignments to all cow chromosomes.