Cow genome map

Conread name: rtra01_e11r1.y1

Conread position: 1-158
Cow position:
Alignm length: 160
Alignm identity: 120
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 137, 59

Conread position: 1-188
Cow position:
Alignm length: 199
Alignm identity: 145
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 59, 34

Conread position: 1-204
Cow position:
Alignm length: 210
Alignm identity: 147
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 57, 105

Conread position: 1-237
Cow position:
Alignm length: 247
Alignm identity: 178
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 49, 96

Conread position: 1-298
Cow position:
Alignm length: 318
Alignm identity: 223
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 43, 61

Conread position: 1-313
Cow position:
Alignm length: 344
Alignm identity: 248
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 59, 202

Conread position: 1-316
Cow position:
Alignm length: 335
Alignm identity: 244
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 116, 61

Conread position: 1-319
Cow position:
Alignm length: 350
Alignm identity: 257
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 17, 59

Conread position: 1-319
Cow position:
Alignm length: 345
Alignm identity: 252
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 59, 34

Conread position: 1-319
Cow position:
Alignm length: 340
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 189

Conread position: 1-327
Cow position:
Alignm length: 354
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 190

Conread position: 1-327
Cow position:
Alignm length: 337
Alignm identity: 232
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 130, 163

Conread position: 1-327
Cow position:
Alignm length: 350
Alignm identity: 252
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 134, 8

Conread position: 1-327
Cow position:
Alignm length: 349
Alignm identity: 251
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 133, 58

Conread position: 1-333
Cow position:
Alignm length: 354
Alignm identity: 242
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 18, 24

Conread position: 1-333
Cow position:
Alignm length: 344
Alignm identity: 246
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 59, 104

Conread position: 1-336
Cow position:
Alignm length: 369
Alignm identity: 264
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 32, 203

Conread position: 1-352
Cow position:
Alignm length: 378
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 198

Conread position: 2-189
Cow position:
Alignm length: 203
Alignm identity: 146
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 55, 0

Conread position: 2-269
Cow position:
Alignm length: 288
Alignm identity: 206
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 32, 0

Conread position: 2-319
Cow position:
Alignm length: 347
Alignm identity: 247
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 32, 84

Conread position: 2-324
Cow position:
Alignm length: 341
Alignm identity: 235
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 17, 55

Conread position: 2-328
Cow position:
Alignm length: 362
Alignm identity: 253
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 32, 300

Conread position: 2-338
Cow position:
Alignm length: 353
Alignm identity: 243
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 17, 30

Conread position: 2-338
Cow position:
Alignm length: 353
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 25

Conread position: 2-368
Cow position:
Alignm length: 374
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 240, 22

Conread position: 3-230
Cow position:
Alignm length: 233
Alignm identity: 155
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 55, 207

Conread position: 3-319
Cow position:
Alignm length: 351
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 7

Conread position: 3-329
Cow position:
Alignm length: 350
Alignm identity: 236
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 51, 180

Conread position: 3-353
Cow position:
Alignm length: 353
Alignm identity: 236
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 201, 55

Conread position: 4-312
Cow position:
Alignm length: 321
Alignm identity: 223
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 52, 97

Conread position: 4-321
Cow position:
Alignm length: 324
Alignm identity: 218
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 200, 56

Conread position: 4-327
Cow position:
Alignm length: 352
Alignm identity: 250
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 53, 0

Conread position: 4-333
Cow position:
Alignm length: 360
Alignm identity: 255
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 134, 56

Conread position: 4-376
Cow position:
Alignm length: 401
Alignm identity: 272
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 134, 56

Conread position: 5-328
Cow position:
Alignm length: 343
Alignm identity: 234
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 29, 151

Conread position: 5-330
Cow position:
Alignm length: 359
Alignm identity: 245
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 24, 0

Conread position: 6-137
Cow position:
Alignm length: 134
Alignm identity: 109
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 52, 108

Conread position: 6-319
Cow position:
Alignm length: 330
Alignm identity: 224
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 28, 0

Conread position: 6-320
Cow position:
Alignm length: 328
Alignm identity: 224
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 54, 68

Conread position: 10-313
Cow position:
Alignm length: 314
Alignm identity: 213
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 52, 176

Conread position: 10-331
Cow position:
Alignm length: 333
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 84

Conread position: 10-348
Cow position:
Alignm length: 369
Alignm identity: 259
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 45, 98

Conread position: 11-318
Cow position:
Alignm length: 335
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 74

Conread position: 11-332
Cow position:
Alignm length: 349
Alignm identity: 230
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 66, 49

Conread position: 21-302
Cow position:
Alignm length: 308
Alignm identity: 217
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 93, 38

Conread position: 24-330
Cow position:
Alignm length: 326
Alignm identity: 214
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 10, 17

Conread position: 24-339
Cow position:
Alignm length: 329
Alignm identity: 223
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 33, 86

Conread position: 25-332
Cow position:
Alignm length: 327
Alignm identity: 219
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 9, 28

Conread position: 28-330
Cow position:
Alignm length: 328
Alignm identity: 219
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 32, 191

Conread position: 29-275
Cow position:
Alignm length: 252
Alignm identity: 180
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 25, 74

Conread position: 31-330
Cow position:
Alignm length: 312
Alignm identity: 207
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 27, 85

Conread position: 35-316
Cow position:
Alignm length: 302
Alignm identity: 202
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 22, 70

Conread position: 37-317
Cow position:
Alignm length: 298
Alignm identity: 207
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 79, 177

Conread position: 40-298
Cow position:
Alignm length: 271
Alignm identity: 194
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 18, 10

Conread position: 57-343
Cow position:
Alignm length: 300
Alignm identity: 215
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 147, 35

Conread position: 59-330
Cow position:
Alignm length: 297
Alignm identity: 214
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 79, 233

Conread position: 129-330
Cow position:
Alignm length: 211
Alignm identity: 163
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 69, 52

Conread position: 133-329
Cow position:
Alignm length: 205
Alignm identity: 153
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 110, 32

Conread position: 135-293
Cow position:
Alignm length: 161
Alignm identity: 119
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 69, 46

Conread position: 135-314
Cow position:
Alignm length: 191
Alignm identity: 141
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 69, 46

Conread position: 135-320
Cow position:
Alignm length: 191
Alignm identity: 136
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 47, 61

Conread position: 135-327
Cow position:
Alignm length: 206
Alignm identity: 156
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 69, 46

Conread position: 135-327
Cow position:
Alignm length: 197
Alignm identity: 144
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 69, 32

Conread position: 135-329
Cow position:
Alignm length: 208
Alignm identity: 164
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 69, 45

Conread position: 135-330
Cow position:
Alignm length: 206
Alignm identity: 157
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 74, 52

Conread position: 135-336
Cow position:
Alignm length: 209
Alignm identity: 155
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 68, 46

Conread position: 135-338
Cow position:
Alignm length: 210
Alignm identity: 165
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 69, 17

Conread position: 135-338
Cow position:
Alignm length: 214
Alignm identity: 153
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 69, 33

Conread position: 135-338
Cow position:
Alignm length: 212
Alignm identity: 154
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 31, 38

Conread position: 135-339
Cow position:
Alignm length: 217
Alignm identity: 163
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 69, 46

Conread position: 135-339
Cow position:
Alignm length: 219
Alignm identity: 157
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 64, 0

Conread position: 135-339
Cow position:
Alignm length: 213
Alignm identity: 162
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 69, 40

Conread position: 135-342
Cow position:
Alignm length: 219
Alignm identity: 172
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 69, 46

Conread position: 137-317
Cow position:
Alignm length: 190
Alignm identity: 150
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 67, 29

Conread position: 137-330
Cow position:
Alignm length: 208
Alignm identity: 159
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 34, 19

Conread position: 138-343
Cow position:
Alignm length: 215
Alignm identity: 152
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 44, 26

Conread position: 139-330
Cow position:
Alignm length: 200
Alignm identity: 149
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 71, 26

Conread position: 141-379
Cow position:
Alignm length: 256
Alignm identity: 176
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 63, 24

Conread position: 144-329
Cow position:
Alignm length: 196
Alignm identity: 146
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 60, 23

Conread position: 148-379
Cow position:
Alignm length: 255
Alignm identity: 189
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 34, 19

Conread position: 149-350
Cow position:
Alignm length: 211
Alignm identity: 152
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 24, 40

Show alignments to all cow chromosomes.