Cow genome map
| Conread name: | rtra01_e11r1.y1 |
| Conread position: | 1-171 |
| Cow position: | chr12:4582999-4582821 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 57, 108 |
| Conread position: | 1-240 |
| Cow position: | chr12:32413569-32413307 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 57, 205 |
| Conread position: | 1-258 |
| Cow position: | chr12:48425763-48425495 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 184 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 137, 45 |
| Conread position: | 1-287 |
| Cow position: | chr12:30064989-30064689 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 222 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 133, 59 |
| Conread position: | 1-308 |
| Cow position: | chr12:5797508-5797824 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 111, 34 |
| Conread position: | 1-324 |
| Cow position: | chr12:45541761-45541437 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 99, 59 |
| Conread position: | 1-330 |
| Cow position: | chr12:18769017-18769378 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-342 |
| Cow position: | chr12:23983711-23983354 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 102, 18 |
| Conread position: | 2-301 |
| Cow position: | chr12:12331457-12331771 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 27, 86 |
| Conread position: | 2-315 |
| Cow position: | chr12:43104564-43104242 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 232 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 100, 188 |
| Conread position: | 2-317 |
| Cow position: | chr12:10161910-10162244 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 231 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 17, 189 |
| Conread position: | 2-319 |
| Cow position: | chr12:31198820-31198477 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 32, 224 |
| Conread position: | 2-330 |
| Cow position: | chr12:16543527-16543870 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 32, 120 |
| Conread position: | 3-320 |
| Cow position: | chr12:26527412-26527095 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 225 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 22, 78 |
| Conread position: | 3-329 |
| Cow position: | chr12:30596520-30596162 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 195 |
| Conread position: | 3-330 |
| Cow position: | chr12:44905679-44905335 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 31, 53 |
| Conread position: | 3-338 |
| Cow position: | chr12:27055658-27055295 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 31, 64 |
| Conread position: | 4-330 |
| Cow position: | chr12:33402982-33403313 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 24, 17 |
| Conread position: | 5-285 |
| Cow position: | chr12:38484344-38484651 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 5-329 |
| Cow position: | chr12:4866867-4866515 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 5-338 |
| Cow position: | chr12:30753769-30753415 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 29, 233 |
| Conread position: | 7-338 |
| Cow position: | chr12:25312325-25312689 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 260 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 100, 52 |
| Conread position: | 8-328 |
| Cow position: | chr12:45555379-45555718 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 8, 17 |
| Conread position: | 10-316 |
| Cow position: | chr12:1883486-1883795 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 38, 28 |
| Conread position: | 10-327 |
| Cow position: | chr12:34849810-34850129 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 85, 50 |
| Conread position: | 11-327 |
| Cow position: | chr12:34852448-34852768 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 84, 49 |
| Conread position: | 18-338 |
| Cow position: | chr12:20312136-20312478 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 254 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 33, 44 |
| Conread position: | 20-210 |
| Cow position: | chr12:41596853-41596661 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 38, 160 |
| Conread position: | 24-325 |
| Cow position: | chr12:19715009-19715324 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 9, 25 |
| Conread position: | 60-319 |
| Cow position: | chr12:5899517-5899236 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 64, 39 |
| Conread position: | 66-338 |
| Cow position: | chr12:11583376-11583094 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 190 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 34, 219 |
| Conread position: | 93-302 |
| Cow position: | chr12:34089781-34089561 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 7, 41 |
| Conread position: | 130-343 |
| Cow position: | chr12:794461-794235 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 32, 5 |
| Conread position: | 135-316 |
| Cow position: | chr12:21304249-21304430 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 106, 43 |
| Conread position: | 135-316 |
| Cow position: | chr12:32400097-32399908 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 69, 40 |
| Conread position: | 135-330 |
| Cow position: | chr12:3212226-3212022 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 65, 40 |
| Conread position: | 135-330 |
| Cow position: | chr12:17881761-17881570 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 69, 46 |
| Conread position: | 135-330 |
| Cow position: | chr12:25619475-25619679 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 33, 22 |
| Conread position: | 135-332 |
| Cow position: | chr12:30170566-30170363 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 71, 32 |
| Conread position: | 136-330 |
| Cow position: | chr12:15232185-15231987 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 48, 30 |
| Conread position: | 140-319 |
| Cow position: | chr12:3950452-3950642 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 64, 27 |
| Conread position: | 140-338 |
| Cow position: | chr12:19124932-19125139 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 90, 18 |
| Conread position: | 143-330 |
| Cow position: | chr12:748128-747938 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 36, 59 |
| Conread position: | 154-305 |
| Cow position: | chr12:8595771-8595616 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 49, 27 |
| Conread position: | 184-332 |
| Cow position: | chr12:14414178-14414026 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 103, 0 |
Show alignments to all cow chromosomes.