Cow genome map

Conread name: rtra01_e11r1.y1

Conread position: 1-137
Cow position: chr13:38631685-38631546 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 104
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 32, 0

Conread position: 1-141
Cow position: chr13:15091016-15090874 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 107
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 59, 34

Conread position: 1-153
Cow position: chr13:46430411-46430257 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 120
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 105, 57

Conread position: 1-187
Cow position: chr13:33955132-33954948 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 134
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 137, 59

Conread position: 1-223
Cow position: chr13:12745566-12745805 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 174
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 55, 23

Conread position: 1-227
Cow position: chr13:26508377-26508602 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 158
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 134, 59

Conread position: 1-234
Cow position: chr13:33975324-33975562 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 183
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 111, 56

Conread position: 1-302
Cow position: chr13:11768151-11767823 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 120

Conread position: 1-302
Cow position: chr13:14220390-14220687 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 218
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 99, 23

Conread position: 1-309
Cow position: chr13:35719244-35718906 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 244
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 137, 40

Conread position: 1-317
Cow position: chr13:33281899-33282249 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 260
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 59, 77

Conread position: 1-319
Cow position: chr13:17886411-17886739 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 246
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 137, 35

Conread position: 1-319
Cow position: chr13:20466392-20466057 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 245
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 33, 79

Conread position: 1-319
Cow position: chr13:22887096-22886754 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 246
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 123, 59

Conread position: 1-319
Cow position: chr13:30509957-30510299 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 247
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 59, 36

Conread position: 1-323
Cow position: chr13:10932444-10932794 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 255
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 57, 96

Conread position: 1-326
Cow position: chr13:13578141-13577792 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 244
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 32, 285

Conread position: 1-327
Cow position: chr13:34995436-34995080 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 252
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 33, 234

Conread position: 1-328
Cow position: chr13:54080921-54080557 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 258
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 59, 194

Conread position: 1-330
Cow position: chr13:26383342-26382982 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 253
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 32, 0

Conread position: 1-332
Cow position: chr13:33161100-33160765 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 229
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 57, 36

Conread position: 1-338
Cow position: chr13:7010366-7010728 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 19

Conread position: 1-338
Cow position: chr13:9802961-9803316 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 252
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 103, 59

Conread position: 1-338
Cow position: chr13:12233560-12233199 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 197

Conread position: 1-339
Cow position: chr13:6621698-6621339 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 38

Conread position: 1-339
Cow position: chr13:32167418-32167049 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 261
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 108, 59

Conread position: 2-327
Cow position: chr13:24280151-24280494 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 251
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 58, 174

Conread position: 3-206
Cow position: chr13:15945376-15945594 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 157
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 31, 0

Conread position: 3-318
Cow position: chr13:1958903-1959246 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 238
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 57, 198

Conread position: 3-330
Cow position: chr13:54969904-54969574 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 240
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 135, 57

Conread position: 5-159
Cow position: chr13:47322513-47322353 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 117
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 29, 0

Conread position: 7-285
Cow position: chr13:2302914-2302638 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 201
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 197, 102

Conread position: 7-327
Cow position: chr13:9664958-9665321 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 257
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 27, 0

Conread position: 7-332
Cow position: chr13:32717965-32717620 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 248
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 53, 101

Conread position: 9-199
Cow position: chr13:54696012-54695823 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 137
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 129, 51

Conread position: 10-258
Cow position: chr13:60301935-60301703 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 183
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 194, 18

Conread position: 10-319
Cow position: chr13:20180316-20180635 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 241
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 50, 111

Conread position: 10-350
Cow position: chr13:38898340-38897982 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 253
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 127, 50

Conread position: 11-327
Cow position: chr13:33631033-33631366 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 236
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 19, 11

Conread position: 14-329
Cow position: chr13:49847829-49848165 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 234
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 46, 0

Conread position: 16-286
Cow position: chr13:21627977-21627683 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 206
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 44, 91

Conread position: 17-330
Cow position: chr13:47502805-47502472 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 242
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 43, 157

Conread position: 24-316
Cow position: chr13:46637206-46636896 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 222
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 77, 93

Conread position: 24-327
Cow position: chr13:57746188-57745854 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 240
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 32, 188

Conread position: 24-332
Cow position: chr13:61166534-61166206 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 228
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 10, 90

Conread position: 26-338
Cow position: chr13:34334022-34333693 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 236
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 21, 179

Conread position: 27-330
Cow position: chr13:43139294-43138980 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 213
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 31, 148

Conread position: 30-231
Cow position: chr13:20057522-20057314 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 148
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 30, 155

Conread position: 32-275
Cow position: chr13:1367947-1368208 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 193
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 25, 162

Conread position: 37-338
Cow position: chr13:37497797-37497499 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 220
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 14, 97

Conread position: 40-329
Cow position: chr13:60487527-60487208 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 235
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 22, 146

Conread position: 43-330
Cow position: chr13:1839336-1839629 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 217
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 7, 67

Conread position: 59-330
Cow position: chr13:21402816-21402546 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 214
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 145, 60

Conread position: 61-326
Cow position: chr13:10658259-10658538 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 201
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 51, 119

Conread position: 95-330
Cow position: chr13:1011338-1011581 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 175
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 109, 15

Conread position: 135-287
Cow position: chr13:4423438-4423278 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 128
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 68, 0

Conread position: 135-316
Cow position: chr13:50823504-50823321 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 151
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 69, 31

Conread position: 135-318
Cow position: chr13:43184823-43184635 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 138
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 102, 32

Conread position: 135-326
Cow position: chr13:4604342-4604536 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 152
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 69, 31

Conread position: 135-330
Cow position: chr13:54094862-54095053 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 149
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 69, 32

Conread position: 135-330
Cow position: chr13:61976916-61976716 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 147
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 69, 30

Conread position: 136-317
Cow position: chr13:21039550-21039365 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 139
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 61, 31

Conread position: 137-332
Cow position: chr13:41359796-41360002 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 153
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 67, 0

Conread position: 137-339
Cow position: chr13:46458673-46458875 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 159
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 67, 48

Conread position: 138-327
Cow position: chr13:22277120-22276925 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 157
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 66, 49

Conread position: 139-350
Cow position: chr13:46516113-46516336 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 161
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 26, 145

Conread position: 140-315
Cow position: chr13:20536554-20536733 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 139
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 42, 24

Conread position: 140-333
Cow position: chr13:11096228-11096420 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 138
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 45, 23

Conread position: 140-338
Cow position: chr13:31808563-31808771 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 148
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 64, 72

Conread position: 142-302
Cow position: chr13:60694635-60694796 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 125
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 62, 39

Conread position: 144-319
Cow position: chr13:9587531-9587346 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 137
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 60, 23

Conread position: 144-350
Cow position: chr13:32949953-32949732 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 157
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 12, 25

Conread position: 146-330
Cow position: chr13:20606062-20605870 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 142
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 9, 23

Conread position: 158-338
Cow position: chr13:21524496-21524684 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 141
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 46, 27

Show alignments to all cow chromosomes.