Cow genome map
| Conread name: | rtra01_e11r1.y1 |
| Conread position: | 1-198 |
| Cow position: | chr14:18979250-18979050 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 53, 137 |
| Conread position: | 1-221 |
| Cow position: | chr14:43031747-43031971 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 59, 208 |
| Conread position: | 1-294 |
| Cow position: | chr14:44595173-44594877 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 116, 58 |
| Conread position: | 1-302 |
| Cow position: | chr14:25362294-25362622 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 1-313 |
| Cow position: | chr14:37679053-37678708 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 188 |
| Conread position: | 1-319 |
| Cow position: | chr14:31399546-31399872 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 242 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 130, 59 |
| Conread position: | 1-327 |
| Cow position: | chr14:26108583-26108944 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 260 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 61, 222 |
| Conread position: | 1-330 |
| Cow position: | chr14:21018064-21018418 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 59 |
| Conread position: | 1-333 |
| Cow position: | chr14:1706248-1706586 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 95, 55 |
| Conread position: | 1-333 |
| Cow position: | chr14:7648069-7647728 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 236 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 33, 145 |
| Conread position: | 1-334 |
| Cow position: | chr14:47604349-47603992 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 250 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 59, 204 |
| Conread position: | 1-354 |
| Cow position: | chr14:9875362-9875720 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 244 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 47, 30 |
| Conread position: | 2-240 |
| Cow position: | chr14:42103194-42103449 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 94, 140 |
| Conread position: | 2-319 |
| Cow position: | chr14:18984943-18984608 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 17, 59 |
| Conread position: | 2-327 |
| Cow position: | chr14:3588489-3588149 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 23, 124 |
| Conread position: | 2-330 |
| Cow position: | chr14:31130424-31130082 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 235 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 32, 91 |
| Conread position: | 2-375 |
| Cow position: | chr14:40737710-40737324 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 270 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 24, 54 |
| Conread position: | 4-285 |
| Cow position: | chr14:26960463-26960181 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 96, 56 |
| Conread position: | 4-319 |
| Cow position: | chr14:28327170-28326868 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 54, 76 |
| Conread position: | 4-320 |
| Cow position: | chr14:10742467-10742795 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 227 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 123, 55 |
| Conread position: | 4-403 |
| Cow position: | chr14:7582496-7582067 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 294 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 107, 56 |
| Conread position: | 5-270 |
| Cow position: | chr14:16352303-16352565 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 199, 52 |
| Conread position: | 5-319 |
| Cow position: | chr14:2967676-2967359 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 30, 40 |
| Conread position: | 5-327 |
| Cow position: | chr14:23107277-23107630 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 258 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 29, 305 |
| Conread position: | 6-319 |
| Cow position: | chr14:6985005-6984672 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 234 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 97, 11 |
| Conread position: | 6-330 |
| Cow position: | chr14:13426805-13427121 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 28, 54 |
| Conread position: | 10-198 |
| Cow position: | chr14:18449049-18448861 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 116, 50 |
| Conread position: | 10-318 |
| Cow position: | chr14:47935837-47936154 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 44, 92 |
| Conread position: | 10-327 |
| Cow position: | chr14:12559522-12559180 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 251 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 47, 104 |
| Conread position: | 10-329 |
| Cow position: | chr14:39821125-39821472 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 90, 49 |
| Conread position: | 11-154 |
| Cow position: | chr14:2189593-2189739 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 17-315 |
| Cow position: | chr14:39302389-39302071 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 96, 39 |
| Conread position: | 24-331 |
| Cow position: | chr14:39807484-39807151 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 237 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 25-322 |
| Cow position: | chr14:23231161-23230852 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 99, 88 |
| Conread position: | 26-330 |
| Cow position: | chr14:14307772-14308090 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 34, 59 |
| Conread position: | 27-338 |
| Cow position: | chr14:11615244-11614902 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 242 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 39-317 |
| Cow position: | chr14:24837948-24837669 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 218 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 68, 7 |
| Conread position: | 59-362 |
| Cow position: | chr14:28565624-28565951 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 238 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 80, 19 |
| Conread position: | 61-330 |
| Cow position: | chr14:14245350-14245629 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 94, 47 |
| Conread position: | 93-302 |
| Cow position: | chr14:15032824-15033031 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 16, 73 |
| Conread position: | 105-330 |
| Cow position: | chr14:35651136-35650899 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 33, 19 |
| Conread position: | 114-368 |
| Cow position: | chr14:24893840-24894108 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 22, 54 |
| Conread position: | 134-333 |
| Cow position: | chr14:26495973-26496172 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 105, 32 |
| Conread position: | 135-285 |
| Cow position: | chr14:39037340-39037487 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 69, 46 |
| Conread position: | 135-302 |
| Cow position: | chr14:25378389-25378215 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 69, 46 |
| Conread position: | 135-310 |
| Cow position: | chr14:3437099-3437277 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 69, 53 |
| Conread position: | 135-321 |
| Cow position: | chr14:31888596-31888408 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 69, 36 |
| Conread position: | 135-327 |
| Cow position: | chr14:27578682-27578485 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 69, 46 |
| Conread position: | 135-329 |
| Cow position: | chr14:15514121-15514323 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 68, 46 |
| Conread position: | 135-329 |
| Cow position: | chr14:27988755-27988952 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 69, 46 |
| Conread position: | 135-338 |
| Cow position: | chr14:8754434-8754641 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 69, 32 |
| Conread position: | 136-319 |
| Cow position: | chr14:46782285-46782099 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 68, 45 |
| Conread position: | 136-330 |
| Cow position: | chr14:9255193-9255003 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 68, 30 |
| Conread position: | 139-330 |
| Cow position: | chr14:35700536-35700738 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 65, 42 |
| Conread position: | 140-330 |
| Cow position: | chr14:6599842-6599647 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 61, 27 |
| Conread position: | 185-330 |
| Cow position: | chr14:45848930-45848776 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 19, 0 |
Show alignments to all cow chromosomes.