Cow genome map
| Conread name: | rtra01_e11r1.y1 |
| Conread position: | 1-135 |
| Cow position: | chr15:46005651-46005520 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 1-151 |
| Cow position: | chr15:47821376-47821523 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 137, 59 |
| Conread position: | 1-178 |
| Cow position: | chr15:10569111-10568926 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 1-185 |
| Cow position: | chr15:26933952-26933760 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 59, 184 |
| Conread position: | 1-204 |
| Cow position: | chr15:21836680-21836881 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 27, 60 |
| Conread position: | 1-228 |
| Cow position: | chr15:6749848-6749621 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 137, 56 |
| Conread position: | 1-230 |
| Cow position: | chr15:23109286-23109061 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 57, 114 |
| Conread position: | 1-240 |
| Cow position: | chr15:36839176-36838925 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 120, 59 |
| Conread position: | 1-271 |
| Cow position: | chr15:40117451-40117175 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 208 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 61, 40 |
| Conread position: | 1-302 |
| Cow position: | chr15:28236891-28236580 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 137, 18 |
| Conread position: | 1-313 |
| Cow position: | chr15:40498296-40497978 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 229 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 56, 152 |
| Conread position: | 1-318 |
| Cow position: | chr15:31617009-31616663 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 1-325 |
| Cow position: | chr15:26421600-26421251 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 86, 59 |
| Conread position: | 1-329 |
| Cow position: | chr15:4373483-4373827 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 137, 57 |
| Conread position: | 1-330 |
| Cow position: | chr15:1830562-1830919 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 24, 59 |
| Conread position: | 1-333 |
| Cow position: | chr15:23140131-23139806 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 59 |
| Conread position: | 1-333 |
| Cow position: | chr15:38322832-38323186 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 198 |
| Conread position: | 1-338 |
| Cow position: | chr15:24977177-24976828 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 59 |
| Conread position: | 2-329 |
| Cow position: | chr15:3832160-3832498 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 24, 188 |
| Conread position: | 2-333 |
| Cow position: | chr15:18715236-18715587 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 243 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 16, 34 |
| Conread position: | 2-333 |
| Cow position: | chr15:50177107-50177451 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 236 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 31, 219 |
| Conread position: | 2-381 |
| Cow position: | chr15:22713830-22713429 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 280 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 69, 8 |
| Conread position: | 3-198 |
| Cow position: | chr15:20482848-20482647 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 31, 95 |
| Conread position: | 3-304 |
| Cow position: | chr15:17213457-17213776 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 234 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 108, 57 |
| Conread position: | 3-310 |
| Cow position: | chr15:25825852-25825525 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 232 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 16, 49 |
| Conread position: | 3-319 |
| Cow position: | chr15:10570616-10570277 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 32, 67 |
| Conread position: | 3-324 |
| Cow position: | chr15:8230568-8230233 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 230 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 31, 210 |
| Conread position: | 3-330 |
| Cow position: | chr15:26702074-26701722 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 191 |
| Conread position: | 3-332 |
| Cow position: | chr15:7980189-7980505 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 230 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 201, 46 |
| Conread position: | 4-198 |
| Cow position: | chr15:16585512-16585705 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 134, 56 |
| Conread position: | 4-298 |
| Cow position: | chr15:3571779-3572093 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 54, 259 |
| Conread position: | 5-318 |
| Cow position: | chr15:44297089-44297400 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 237 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 142, 55 |
| Conread position: | 5-319 |
| Cow position: | chr15:39405745-39406076 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 29, 45 |
| Conread position: | 5-329 |
| Cow position: | chr15:23768256-23767913 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 27, 176 |
| Conread position: | 5-348 |
| Cow position: | chr15:3572698-3572334 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 133, 55 |
| Conread position: | 6-331 |
| Cow position: | chr15:27247509-27247867 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 68, 31 |
| Conread position: | 7-336 |
| Cow position: | chr15:13387080-13387444 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 255 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 27, 349 |
| Conread position: | 10-308 |
| Cow position: | chr15:19214045-19214355 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 9, 129 |
| Conread position: | 10-312 |
| Cow position: | chr15:42195261-42194946 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 50, 210 |
| Conread position: | 10-317 |
| Cow position: | chr15:44252369-44252701 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 10-327 |
| Cow position: | chr15:34255719-34255398 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 49 |
| Conread position: | 10-329 |
| Cow position: | chr15:27732418-27732750 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 81 |
| Conread position: | 11-234 |
| Cow position: | chr15:8414225-8414005 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 13, 46 |
| Conread position: | 11-325 |
| Cow position: | chr15:23054280-23054602 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 225 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 91, 7 |
| Conread position: | 16-319 |
| Cow position: | chr15:7962089-7962419 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 24-327 |
| Cow position: | chr15:21802147-21801819 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 33, 180 |
| Conread position: | 24-353 |
| Cow position: | chr15:52204735-52204389 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 88, 28 |
| Conread position: | 26-333 |
| Cow position: | chr15:39417943-39418243 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 7, 96 |
| Conread position: | 35-327 |
| Cow position: | chr15:2210607-2210916 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 23, 165 |
| Conread position: | 44-327 |
| Cow position: | chr15:19192898-19192594 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 208 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 54, 154 |
| Conread position: | 57-240 |
| Cow position: | chr15:16946764-16946567 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 45, 140 |
| Conread position: | 59-333 |
| Cow position: | chr15:19403051-19403333 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 53, 115 |
| Conread position: | 76-302 |
| Cow position: | chr15:20401832-20401592 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 63, 159 |
| Conread position: | 133-330 |
| Cow position: | chr15:19186470-19186262 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 71, 54 |
| Conread position: | 133-338 |
| Cow position: | chr15:25111019-25110804 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 175 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 25, 56 |
| Conread position: | 135-241 |
| Cow position: | chr15:33770769-33770873 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 90 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 69, 46 |
| Conread position: | 135-302 |
| Cow position: | chr15:52462867-52463040 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 100, 46 |
| Conread position: | 135-319 |
| Cow position: | chr15:39894740-39894920 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 69, 43 |
| Conread position: | 135-321 |
| Cow position: | chr15:9072277-9072089 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 68, 46 |
| Conread position: | 135-325 |
| Cow position: | chr15:37632728-37632527 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 69, 46 |
| Conread position: | 135-327 |
| Cow position: | chr15:35041722-35041518 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 69, 46 |
| Conread position: | 135-329 |
| Cow position: | chr15:24285133-24285338 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 170 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 69, 46 |
| Conread position: | 135-332 |
| Cow position: | chr15:1758294-1758494 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 68, 54 |
| Conread position: | 135-334 |
| Cow position: | chr15:3700133-3699925 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 70, 30 |
| Conread position: | 136-327 |
| Cow position: | chr15:11957694-11957884 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 68, 45 |
| Conread position: | 136-330 |
| Cow position: | chr15:44797681-44797878 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 68, 45 |
| Conread position: | 138-329 |
| Cow position: | chr15:34104426-34104618 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 66, 27 |
| Conread position: | 138-350 |
| Cow position: | chr15:16786829-16787033 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 109, 58 |
| Conread position: | 138-352 |
| Cow position: | chr15:33680808-33681023 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 66, 35 |
| Conread position: | 139-339 |
| Cow position: | chr15:52154636-52154429 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 44, 28 |
| Conread position: | 140-318 |
| Cow position: | chr15:30820680-30820494 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 85, 27 |
| Conread position: | 140-318 |
| Cow position: | chr15:39621498-39621679 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 64, 72 |
| Conread position: | 140-330 |
| Cow position: | chr15:5498874-5498676 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 64, 24 |
| Conread position: | 141-338 |
| Cow position: | chr15:33306268-33306469 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 63, 24 |
| Conread position: | 144-326 |
| Cow position: | chr15:35642180-35642369 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 60, 23 |
| Conread position: | 144-330 |
| Cow position: | chr15:16616361-16616547 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 60, 23 |
| Conread position: | 179-330 |
| Cow position: | chr15:9267865-9267711 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 54, 25 |
Show alignments to all cow chromosomes.