Cow genome map
| Conread name: | rtra01_e11r1.y1 |
| Conread position: | 1-186 |
| Cow position: | chr16:2618895-2619081 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 123, 52 |
| Conread position: | 1-222 |
| Cow position: | chr16:228403-228633 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 59, 188 |
| Conread position: | 1-240 |
| Cow position: | chr16:20260566-20260326 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 59, 32 |
| Conread position: | 1-240 |
| Cow position: | chr16:38621048-38620796 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 17, 106 |
| Conread position: | 1-302 |
| Cow position: | chr16:12738408-12738098 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 225 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 101, 59 |
| Conread position: | 1-302 |
| Cow position: | chr16:19002999-19003304 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 59 |
| Conread position: | 1-302 |
| Cow position: | chr16:41608700-41608375 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 43, 50 |
| Conread position: | 1-319 |
| Cow position: | chr16:18557171-18557519 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 247 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-319 |
| Cow position: | chr16:36930224-36930573 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 259 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 59, 205 |
| Conread position: | 1-323 |
| Cow position: | chr16:42257540-42257198 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 247 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 57, 207 |
| Conread position: | 1-325 |
| Cow position: | chr16:4499521-4499182 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 242 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 97, 44 |
| Conread position: | 1-327 |
| Cow position: | chr16:4979895-4979555 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 229 |
| Conread position: | 1-331 |
| Cow position: | chr16:16055967-16056299 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 232 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 59, 107 |
| Conread position: | 1-338 |
| Cow position: | chr16:23066747-23066394 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 137, 34 |
| Conread position: | 2-119 |
| Cow position: | chr16:23163484-23163603 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 2-254 |
| Cow position: | chr16:689795-689531 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 27, 79 |
| Conread position: | 2-327 |
| Cow position: | chr16:13181829-13181479 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 32, 20 |
| Conread position: | 2-332 |
| Cow position: | chr16:5477268-5477613 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 23, 32 |
| Conread position: | 3-137 |
| Cow position: | chr16:56104822-56104957 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 3-313 |
| Cow position: | chr16:52577548-52577212 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 3-327 |
| Cow position: | chr16:23025431-23025085 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 255 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 38, 195 |
| Conread position: | 4-178 |
| Cow position: | chr16:10303661-10303835 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 135, 56 |
| Conread position: | 4-301 |
| Cow position: | chr16:55586521-55586832 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 96, 42 |
| Conread position: | 4-323 |
| Cow position: | chr16:13195250-13195590 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 58, 238 |
| Conread position: | 5-338 |
| Cow position: | chr16:42242029-42242392 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 257 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 52, 179 |
| Conread position: | 6-236 |
| Cow position: | chr16:45693233-45692983 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 48, 40 |
| Conread position: | 6-241 |
| Cow position: | chr16:14974456-14974699 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 23, 52 |
| Conread position: | 6-338 |
| Cow position: | chr16:48398166-48398517 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 245 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 29, 122 |
| Conread position: | 10-268 |
| Cow position: | chr16:44722948-44723217 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 203 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 112, 164 |
| Conread position: | 10-319 |
| Cow position: | chr16:15806037-15805729 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 103 |
| Conread position: | 10-327 |
| Cow position: | chr16:44898669-44898992 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 121, 49 |
| Conread position: | 10-330 |
| Cow position: | chr16:8704348-8704033 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 228 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 95, 50 |
| Conread position: | 10-332 |
| Cow position: | chr16:23990425-23990753 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 194, 89 |
| Conread position: | 10-338 |
| Cow position: | chr16:49215918-49216235 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 225 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 211, 47 |
| Conread position: | 10-339 |
| Cow position: | chr16:23674236-23673893 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 248 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 19, 168 |
| Conread position: | 10-372 |
| Cow position: | chr16:27013985-27013592 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 269 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 23-330 |
| Cow position: | chr16:53547522-53547848 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 20, 91 |
| Conread position: | 24-262 |
| Cow position: | chr16:47384995-47385254 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 36, 180 |
| Conread position: | 28-330 |
| Cow position: | chr16:3333462-3333163 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 87, 29 |
| Conread position: | 28-330 |
| Cow position: | chr16:7047707-7048035 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 218 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 32-338 |
| Cow position: | chr16:41590838-41590510 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 26, 178 |
| Conread position: | 38-355 |
| Cow position: | chr16:29510299-29510623 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 13, 31 |
| Conread position: | 59-299 |
| Cow position: | chr16:52487929-52487679 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 37, 10 |
| Conread position: | 59-331 |
| Cow position: | chr16:54564529-54564814 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 79, 118 |
| Conread position: | 60-320 |
| Cow position: | chr16:46222935-46223215 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 38, 104 |
| Conread position: | 76-339 |
| Cow position: | chr16:15677557-15677285 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 20, 60 |
| Conread position: | 94-318 |
| Cow position: | chr16:17948207-17948434 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 175 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 110, 43 |
| Conread position: | 111-330 |
| Cow position: | chr16:51578449-51578683 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 135-302 |
| Cow position: | chr16:28816158-28816329 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 69, 23 |
| Conread position: | 135-317 |
| Cow position: | chr16:11008280-11008093 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 69, 29 |
| Conread position: | 135-319 |
| Cow position: | chr16:36911108-36911284 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 69, 48 |
| Conread position: | 135-327 |
| Cow position: | chr16:2308623-2308423 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 68, 40 |
| Conread position: | 135-329 |
| Cow position: | chr16:27005139-27004937 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 69, 38 |
| Conread position: | 135-329 |
| Cow position: | chr16:43850895-43851085 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 69, 46 |
| Conread position: | 135-330 |
| Cow position: | chr16:30939671-30939470 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 70, 58 |
| Conread position: | 135-330 |
| Cow position: | chr16:37442189-37442392 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 69, 46 |
| Conread position: | 135-333 |
| Cow position: | chr16:25043656-25043463 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 69, 46 |
| Conread position: | 135-338 |
| Cow position: | chr16:34210472-34210687 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 37, 54 |
| Conread position: | 135-342 |
| Cow position: | chr16:17745770-17745558 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 108, 32 |
| Conread position: | 135-342 |
| Cow position: | chr16:22786111-22786321 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 68, 52 |
| Conread position: | 135-349 |
| Cow position: | chr16:3918468-3918244 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 69, 46 |
| Conread position: | 135-386 |
| Cow position: | chr16:14799807-14800061 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 69, 46 |
| Conread position: | 138-298 |
| Cow position: | chr16:25463709-25463545 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 59, 37 |
| Conread position: | 138-304 |
| Cow position: | chr16:18632417-18632599 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 45, 115 |
| Conread position: | 138-330 |
| Cow position: | chr16:7456525-7456730 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 66, 29 |
| Conread position: | 140-302 |
| Cow position: | chr16:49171480-49171643 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 58, 41 |
| Conread position: | 140-316 |
| Cow position: | chr16:56522539-56522722 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 140-317 |
| Cow position: | chr16:9729138-9728953 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 64, 28 |
| Conread position: | 140-319 |
| Cow position: | chr16:12169759-12169944 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 63, 35 |
| Conread position: | 140-328 |
| Cow position: | chr16:35343538-35343737 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 64, 24 |
| Conread position: | 140-329 |
| Cow position: | chr16:23483225-23483025 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 64, 23 |
| Conread position: | 140-329 |
| Cow position: | chr16:42253634-42253833 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 64, 24 |
| Conread position: | 140-330 |
| Cow position: | chr16:49169453-49169646 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 64, 41 |
| Conread position: | 140-350 |
| Cow position: | chr16:11775117-11775337 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 64, 27 |
| Conread position: | 144-329 |
| Cow position: | chr16:9497348-9497536 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 60, 23 |
| Conread position: | 144-339 |
| Cow position: | chr16:55308607-55308803 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 60, 21 |
Show alignments to all cow chromosomes.