Cow genome map
| Conread name: | rtra01_e11r1.y1 |
| Conread position: | 1-131 |
| Cow position: | chr17:31798317-31798450 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 59, 30 |
| Conread position: | 1-183 |
| Cow position: | chr17:32457437-32457620 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 137, 58 |
| Conread position: | 1-188 |
| Cow position: | chr17:13715902-13716092 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 59, 172 |
| Conread position: | 1-202 |
| Cow position: | chr17:15634753-15634963 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 123, 59 |
| Conread position: | 1-241 |
| Cow position: | chr17:12554576-12554822 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 18, 130 |
| Conread position: | 1-241 |
| Cow position: | chr17:24880872-24880618 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 57, 75 |
| Conread position: | 1-267 |
| Cow position: | chr17:7614245-7614529 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 44, 30 |
| Conread position: | 1-287 |
| Cow position: | chr17:7595282-7594984 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 215 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 123, 59 |
| Conread position: | 1-319 |
| Cow position: | chr17:728224-728513 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 57, 21 |
| Conread position: | 1-329 |
| Cow position: | chr17:25708088-25707733 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 259 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 137, 59 |
| Conread position: | 1-330 |
| Cow position: | chr17:11374564-11374912 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 17, 146 |
| Conread position: | 1-330 |
| Cow position: | chr17:19891757-19891392 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 266 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 33, 210 |
| Conread position: | 1-330 |
| Cow position: | chr17:27697570-27697915 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 82, 18 |
| Conread position: | 2-318 |
| Cow position: | chr17:23206150-23205824 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 240 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 126, 56 |
| Conread position: | 2-327 |
| Cow position: | chr17:20208695-20209029 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 23, 17 |
| Conread position: | 2-330 |
| Cow position: | chr17:20652779-20653118 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 240 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 55, 107 |
| Conread position: | 2-338 |
| Cow position: | chr17:16448443-16448101 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 172, 36 |
| Conread position: | 3-338 |
| Cow position: | chr17:40815633-40815961 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 239 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 9, 38 |
| Conread position: | 5-330 |
| Cow position: | chr17:9565430-9565086 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 242 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 24, 53 |
| Conread position: | 5-330 |
| Cow position: | chr17:34078982-34079321 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 28, 117 |
| Conread position: | 5-338 |
| Cow position: | chr17:15985479-15985123 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 14, 67 |
| Conread position: | 6-327 |
| Cow position: | chr17:20216294-20215952 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 48, 182 |
| Conread position: | 6-327 |
| Cow position: | chr17:28359969-28359633 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 56, 90 |
| Conread position: | 6-330 |
| Cow position: | chr17:6936553-6936887 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 236 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 126, 51 |
| Conread position: | 7-189 |
| Cow position: | chr17:2271126-2270940 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 53, 145 |
| Conread position: | 10-241 |
| Cow position: | chr17:21373800-21373555 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 50, 179 |
| Conread position: | 10-302 |
| Cow position: | chr17:37138884-37138579 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 90, 237 |
| Conread position: | 10-317 |
| Cow position: | chr17:18173705-18174014 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 90, 41 |
| Conread position: | 10-319 |
| Cow position: | chr17:30236319-30236016 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 231 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 52, 63 |
| Conread position: | 11-227 |
| Cow position: | chr17:24294521-24294303 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 49, 131 |
| Conread position: | 11-318 |
| Cow position: | chr17:8279585-8279918 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 192 |
| Conread position: | 15-370 |
| Cow position: | chr17:4330723-4330370 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 39, 28 |
| Conread position: | 24-330 |
| Cow position: | chr17:30539156-30539472 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 10, 34 |
| Conread position: | 25-308 |
| Cow position: | chr17:14303619-14303923 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 35, 66 |
| Conread position: | 25-330 |
| Cow position: | chr17:25145220-25145533 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 113, 35 |
| Conread position: | 26-327 |
| Cow position: | chr17:13989065-13989394 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 229 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 59-330 |
| Cow position: | chr17:23879749-23880051 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 61-235 |
| Cow position: | chr17:7861790-7861961 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 77, 39 |
| Conread position: | 61-326 |
| Cow position: | chr17:3466898-3466617 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 55, 134 |
| Conread position: | 79-335 |
| Cow position: | chr17:6996298-6996049 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 125, 29 |
| Conread position: | 80-330 |
| Cow position: | chr17:3387324-3387071 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 42, 92 |
| Conread position: | 83-327 |
| Cow position: | chr17:36533419-36533154 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 55, 108 |
| Conread position: | 122-319 |
| Cow position: | chr17:25078011-25078205 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 31, 46 |
| Conread position: | 135-294 |
| Cow position: | chr17:28847689-28847852 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 68, 48 |
| Conread position: | 135-302 |
| Cow position: | chr17:4436255-4436423 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 100, 30 |
| Conread position: | 135-319 |
| Cow position: | chr17:1653714-1653900 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 78, 69 |
| Conread position: | 135-319 |
| Cow position: | chr17:18246055-18245863 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 69, 46 |
| Conread position: | 135-330 |
| Cow position: | chr17:5423093-5423294 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 104, 32 |
| Conread position: | 135-330 |
| Cow position: | chr17:23803436-23803245 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 68, 39 |
| Conread position: | 135-330 |
| Cow position: | chr17:30204634-30204432 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 68, 46 |
| Conread position: | 135-333 |
| Cow position: | chr17:34628502-34628707 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 69, 40 |
| Conread position: | 135-338 |
| Cow position: | chr17:25181166-25181380 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 69, 23 |
| Conread position: | 135-342 |
| Cow position: | chr17:7698031-7697822 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 43, 29 |
| Conread position: | 137-336 |
| Cow position: | chr17:13236749-13236957 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 66, 11 |
| Conread position: | 139-329 |
| Cow position: | chr17:25590261-25590458 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 64, 42 |
| Conread position: | 140-329 |
| Cow position: | chr17:11618558-11618358 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 95, 27 |
| Conread position: | 140-330 |
| Cow position: | chr17:1783633-1783829 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 64, 9 |
| Conread position: | 140-330 |
| Cow position: | chr17:12216101-12216300 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 64, 25 |
| Conread position: | 140-339 |
| Cow position: | chr17:11056398-11056606 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 64, 27 |
| Conread position: | 144-330 |
| Cow position: | chr17:27679268-27679467 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 163-342 |
| Cow position: | chr17:20337741-20337561 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 41, 25 |
Show alignments to all cow chromosomes.