Cow genome map

Conread name: rtra01_e11r1.y1

Conread position: 1-117
Cow position: chr18:26372979-26372861 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 59, 0

Conread position: 1-137
Cow position: chr18:213478-213616 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 61, 0

Conread position: 1-259
Cow position: chr18:23714824-23715110 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 213
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 33, 225

Conread position: 1-262
Cow position: chr18:15831538-15831802 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 198
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 137, 59

Conread position: 1-275
Cow position: chr18:44493427-44493708 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 209
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 30, 35

Conread position: 1-286
Cow position: chr18:6157972-6157670 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 207
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 131, 61

Conread position: 1-302
Cow position: chr18:21176246-21175917 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 236
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 34, 198

Conread position: 1-302
Cow position: chr18:40893332-40893029 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 217
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 61, 77

Conread position: 1-313
Cow position: chr18:34324896-34325237 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 242
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 99, 63

Conread position: 1-314
Cow position: chr18:32773937-32773599 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 244
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 33, 23

Conread position: 1-318
Cow position: chr18:4578428-4578753 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 238
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 31, 167

Conread position: 1-326
Cow position: chr18:38793828-38794152 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 247
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 56, 66

Conread position: 1-327
Cow position: chr18:25970576-25970925 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 248
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 137, 63

Conread position: 1-329
Cow position: chr18:25002831-25003172 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 251
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 59, 24

Conread position: 1-330
Cow position: chr18:45961212-45961555 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 120

Conread position: 1-330
Cow position: chr18:55696965-55697311 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 245
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 130, 57

Conread position: 1-333
Cow position: chr18:21575045-21574704 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 241
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 19, 29

Conread position: 1-334
Cow position: chr18:16726707-16726345 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 74

Conread position: 1-338
Cow position: chr18:21681914-21682274 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 0

Conread position: 2-298
Cow position: chr18:1495361-1495044 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 217
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 58, 197

Conread position: 2-330
Cow position: chr18:16134255-16134604 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 242
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 32, 118

Conread position: 3-330
Cow position: chr18:23317051-23317399 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 229
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 22, 232

Conread position: 4-302
Cow position: chr18:33275345-33275043 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 219
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 132, 32

Conread position: 5-241
Cow position: chr18:2619158-2619396 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 167
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 30, 110

Conread position: 6-327
Cow position: chr18:51271694-51272033 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 234
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 23, 228

Conread position: 6-327
Cow position: chr18:51537626-51537955 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 150

Conread position: 6-329
Cow position: chr18:17324755-17324415 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 230
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 116, 55

Conread position: 6-338
Cow position: chr18:34051937-34052293 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 256
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 51, 271

Conread position: 10-153
Cow position: chr18:51002489-51002628 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 110
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 48, 104

Conread position: 10-329
Cow position: chr18:11322646-11322294 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 234
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 24, 0

Conread position: 10-330
Cow position: chr18:43113895-43114216 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 78

Conread position: 13-352
Cow position: chr18:11685029-11684671 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 229
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 21, 0

Conread position: 15-347
Cow position: chr18:1144139-1144507 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 243
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 17-327
Cow position: chr18:42061119-42060783 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 246
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 43, 0

Conread position: 24-319
Cow position: chr18:26535472-26535801 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 242
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 34, 264

Conread position: 24-329
Cow position: chr18:40202768-40203094 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 231
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 19, 9

Conread position: 24-330
Cow position: chr18:4516065-4515731 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 237
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 36, 171

Conread position: 25-328
Cow position: chr18:23424934-23424634 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 220
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 54, 10

Conread position: 28-332
Cow position: chr18:13172501-13172821 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 217
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 30, 76

Conread position: 40-332
Cow position: chr18:50993250-50993568 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 224
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 18, 65

Conread position: 42-318
Cow position: chr18:23652603-23652897 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 64

Conread position: 135-295
Cow position: chr18:19363839-19363675 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 69, 145

Conread position: 135-296
Cow position: chr18:22411711-22411876 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 131
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 69, 43

Conread position: 135-297
Cow position: chr18:17669898-17670062 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 69, 47

Conread position: 135-298
Cow position: chr18:19487017-19486853 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 128
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 106, 46

Conread position: 135-325
Cow position: chr18:36478103-36477907 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 153
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 104, 46

Conread position: 135-327
Cow position: chr18:51298383-51298188 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 159
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 68, 42

Conread position: 135-329
Cow position: chr18:11367856-11368058 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 153
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 69, 46

Conread position: 135-330
Cow position: chr18:8170093-8169878 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 154
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 49, 0

Conread position: 135-330
Cow position: chr18:16842159-16842361 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 155
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 69, 53

Conread position: 135-330
Cow position: chr18:23807969-23808169 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 153
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 69, 33

Conread position: 135-330
Cow position: chr18:49161539-49161752 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 156
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 30, 0

Conread position: 135-338
Cow position: chr18:22065449-22065667 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 166
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 41, 0

Conread position: 135-338
Cow position: chr18:32860547-32860342 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 163
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 69, 13

Conread position: 135-338
Cow position: chr18:36445343-36445126 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 160
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 106, 32

Conread position: 135-342
Cow position: chr18:50700575-50700358 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 174
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 69, 38

Conread position: 138-330
Cow position: chr18:4648840-4649031 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 146
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 66, 26

Conread position: 138-330
Cow position: chr18:29768816-29768618 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 159
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 66, 43

Conread position: 139-319
Cow position: chr18:36098103-36097916 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 137
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 65, 30

Conread position: 139-326
Cow position: chr18:5995367-5995180 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 142
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 62, 19

Conread position: 140-270
Cow position: chr18:219233-219100 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 64, 41

Conread position: 140-329
Cow position: chr18:44262525-44262328 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 151
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 64, 41

Conread position: 140-330
Cow position: chr18:52637622-52637825 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 146
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 64, 24

Conread position: 148-298
Cow position: chr18:33793598-33793447 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 118
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 56, 16

Show alignments to all cow chromosomes.