Cow genome map
| Conread name: | rtra01_e11r1.y1 |
| Conread position: | 1-137 |
| Cow position: | chr19:3080543-3080405 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 31, 121 |
| Conread position: | 1-191 |
| Cow position: | chr19:6735145-6735340 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 45, 121 |
| Conread position: | 1-191 |
| Cow position: | chr19:31126878-31126693 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 59, 146 |
| Conread position: | 1-235 |
| Cow position: | chr19:4824901-4825149 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 33, 87 |
| Conread position: | 1-237 |
| Cow position: | chr19:15936913-15936668 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 138, 27 |
| Conread position: | 1-241 |
| Cow position: | chr19:9100228-9099981 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 185 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 1-286 |
| Cow position: | chr19:20292011-20292314 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 213 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 53, 102 |
| Conread position: | 1-298 |
| Cow position: | chr19:2342560-2342237 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 228 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 137, 59 |
| Conread position: | 1-317 |
| Cow position: | chr19:905047-904721 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 9 |
| Conread position: | 1-327 |
| Cow position: | chr19:21285000-21285357 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 13, 60 |
| Conread position: | 1-331 |
| Cow position: | chr19:9387715-9387358 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 33, 43 |
| Conread position: | 1-338 |
| Cow position: | chr19:39876450-39876800 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 99, 60 |
| Conread position: | 1-350 |
| Cow position: | chr19:3178169-3177811 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 255 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 17, 195 |
| Conread position: | 2-137 |
| Cow position: | chr19:31984568-31984706 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 2-247 |
| Cow position: | chr19:39250343-39250101 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 180, 58 |
| Conread position: | 3-323 |
| Cow position: | chr19:32989347-32989656 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 218 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 38, 28 |
| Conread position: | 3-330 |
| Cow position: | chr19:19662122-19661767 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 260 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 100, 57 |
| Conread position: | 4-314 |
| Cow position: | chr19:54225231-54225557 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 231 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 44, 57 |
| Conread position: | 4-328 |
| Cow position: | chr19:40715218-40714887 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 232 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 15, 41 |
| Conread position: | 4-330 |
| Cow position: | chr19:36461451-36461801 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 4-379 |
| Cow position: | chr19:53738412-53738007 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 282 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 101, 56 |
| Conread position: | 5-327 |
| Cow position: | chr19:5648587-5648923 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 185 |
| Conread position: | 5-330 |
| Cow position: | chr19:729670-730005 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 223 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 148, 52 |
| Conread position: | 5-330 |
| Cow position: | chr19:55236562-55236218 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 246 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 71, 54 |
| Conread position: | 6-327 |
| Cow position: | chr19:8128381-8128044 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 28, 134 |
| Conread position: | 10-240 |
| Cow position: | chr19:7838973-7839217 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 128, 50 |
| Conread position: | 10-319 |
| Cow position: | chr19:42647003-42647326 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 236 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 89, 12 |
| Conread position: | 10-327 |
| Cow position: | chr19:1713066-1713411 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 46, 197 |
| Conread position: | 24-240 |
| Cow position: | chr19:47479569-47479795 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 107, 36 |
| Conread position: | 24-329 |
| Cow position: | chr19:31395840-31396164 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 33, 159 |
| Conread position: | 27-342 |
| Cow position: | chr19:40450072-40449746 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 228 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 31, 245 |
| Conread position: | 28-330 |
| Cow position: | chr19:4460361-4460688 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 30-329 |
| Cow position: | chr19:15438153-15437835 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 33, 150 |
| Conread position: | 35-308 |
| Cow position: | chr19:6880831-6881131 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 23, 164 |
| Conread position: | 47-335 |
| Cow position: | chr19:33281388-33281090 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 223 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 86, 12 |
| Conread position: | 50-326 |
| Cow position: | chr19:2260101-2260396 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 219 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 88, 13 |
| Conread position: | 59-332 |
| Cow position: | chr19:33882151-33882434 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 79, 44 |
| Conread position: | 60-328 |
| Cow position: | chr19:27104748-27104477 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 192 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 27, 89 |
| Conread position: | 135-325 |
| Cow position: | chr19:32214724-32214535 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 152, 45 |
| Conread position: | 135-330 |
| Cow position: | chr19:10171928-10171725 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 69, 32 |
| Conread position: | 135-330 |
| Cow position: | chr19:46918775-46918566 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 55, 32 |
| Conread position: | 135-333 |
| Cow position: | chr19:16694117-16694325 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 78, 32 |
| Conread position: | 135-340 |
| Cow position: | chr19:36976988-36977196 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 69, 40 |
| Conread position: | 136-297 |
| Cow position: | chr19:19242026-19241852 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 137-338 |
| Cow position: | chr19:30746328-30746117 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 67, 44 |
| Conread position: | 138-350 |
| Cow position: | chr19:38907433-38907648 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 66, 43 |
| Conread position: | 139-316 |
| Cow position: | chr19:18242506-18242682 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 59, 46 |
| Conread position: | 140-329 |
| Cow position: | chr19:18750153-18750354 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 64, 24 |
| Conread position: | 140-330 |
| Cow position: | chr19:23005440-23005640 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 64, 28 |
| Conread position: | 140-330 |
| Cow position: | chr19:24358309-24358498 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 64, 32 |
| Conread position: | 140-339 |
| Cow position: | chr19:2734371-2734165 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 64, 27 |
| Conread position: | 141-333 |
| Cow position: | chr19:33932229-33932419 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 113, 26 |
| Conread position: | 142-330 |
| Cow position: | chr19:36059853-36059657 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 95, 23 |
Show alignments to all cow chromosomes.