Cow genome map

Conread name: rtra01_e11r1.y1

Conread position: 1-133
Cow position: chr2:77982055-77982184 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 106
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 59, 0

Conread position: 1-137
Cow position: chr2:73999817-73999679 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 103
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 57, 0

Conread position: 1-183
Cow position: chr2:7498667-7498488 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 131
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 137, 59

Conread position: 1-191
Cow position: chr2:83744955-83745150 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 144
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 125, 57

Conread position: 1-214
Cow position: chr2:67759060-67759266 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 150
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 70, 21

Conread position: 1-251
Cow position: chr2:31113935-31113698 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 181
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 57, 100

Conread position: 1-285
Cow position: chr2:24720380-24720083 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 211
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 63, 42

Conread position: 1-302
Cow position: chr2:793738-793415 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 233
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 59, 24

Conread position: 1-302
Cow position: chr2:26042147-26042471 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 195

Conread position: 1-302
Cow position: chr2:49480502-49480830 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 228
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 138, 34

Conread position: 1-309
Cow position: chr2:50400507-50400177 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 233
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 77, 51

Conread position: 1-319
Cow position: chr2:48748633-48748976 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 242
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 33, 193

Conread position: 1-323
Cow position: chr2:40313457-40313118 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 244
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 101, 30

Conread position: 1-327
Cow position: chr2:14749684-14749335 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 255
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 59, 31

Conread position: 1-327
Cow position: chr2:35908857-35908525 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 233
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 18, 32

Conread position: 1-327
Cow position: chr2:40492450-40492109 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 235
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 54, 145

Conread position: 1-327
Cow position: chr2:53496820-53497141 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 229
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 138, 59

Conread position: 1-328
Cow position: chr2:10296189-10295841 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 240
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 18, 40

Conread position: 1-330
Cow position: chr2:2740553-2740222 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 243
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 57, 19

Conread position: 1-339
Cow position: chr2:425907-425550 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 262
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 59, 201

Conread position: 1-339
Cow position: chr2:8245609-8245280 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 240
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 34, 103

Conread position: 1-347
Cow position: chr2:31155800-31155436 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 59

Conread position: 1-370
Cow position: chr2:53000600-53000206 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 275
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 93, 8

Conread position: 2-258
Cow position: chr2:65749747-65749478 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 182
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 17, 30

Conread position: 2-268
Cow position: chr2:17341977-17341704 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 195
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 33, 184

Conread position: 2-276
Cow position: chr2:30389467-30389184 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 199
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 22, 174

Conread position: 2-302
Cow position: chr2:15769415-15769721 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 58

Conread position: 2-310
Cow position: chr2:46207271-46207574 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 221
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 17, 140

Conread position: 2-316
Cow position: chr2:20302045-20301734 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 225
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 17, 108

Conread position: 2-327
Cow position: chr2:78907010-78906667 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 244
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 54, 19

Conread position: 2-329
Cow position: chr2:4796843-4796503 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 57

Conread position: 2-332
Cow position: chr2:36998227-36997890 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 241
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 32, 94

Conread position: 2-334
Cow position: chr2:27318946-27318592 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 239
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 17, 36

Conread position: 2-338
Cow position: chr2:31909935-31910295 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 248
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 16, 0

Conread position: 3-318
Cow position: chr2:41313984-41313638 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 256
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 57, 200

Conread position: 3-319
Cow position: chr2:82311109-82311458 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 251
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 57, 14

Conread position: 3-338
Cow position: chr2:70579613-70579984 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 262
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 57, 0

Conread position: 4-183
Cow position: chr2:24106485-24106301 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 132
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 56, 110

Conread position: 4-329
Cow position: chr2:43718992-43718653 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 6

Conread position: 4-330
Cow position: chr2:27145278-27145627 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 250
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 15, 199

Conread position: 4-330
Cow position: chr2:29382589-29382938 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 257
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 6, 94

Conread position: 4-338
Cow position: chr2:27612942-27613299 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 261
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 109, 56

Conread position: 5-319
Cow position: chr2:70752884-70752539 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 248
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 133, 55

Conread position: 5-330
Cow position: chr2:37072886-37072549 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 235
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 49, 115

Conread position: 5-333
Cow position: chr2:85250424-85250089 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 236
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 53, 145

Conread position: 5-342
Cow position: chr2:14349857-14349521 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 240
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 41, 163

Conread position: 6-202
Cow position: chr2:4010194-4009993 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 154
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 111, 31

Conread position: 6-253
Cow position: chr2:70306230-70305985 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 177
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 52, 165

Conread position: 6-319
Cow position: chr2:40836086-40836415 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 234
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 114, 50

Conread position: 6-331
Cow position: chr2:44065659-44065328 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 44

Conread position: 7-319
Cow position: chr2:22859552-22859889 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 240
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 25, 199

Conread position: 10-324
Cow position: chr2:32453445-32453765 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 228
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 69, 50

Conread position: 10-352
Cow position: chr2:37229987-37229637 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 247
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 50, 178

Conread position: 12-248
Cow position: chr2:18889340-18889557 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 169
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 192, 48

Conread position: 12-330
Cow position: chr2:39855872-39855526 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 252
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 48, 16

Conread position: 12-330
Cow position: chr2:62226260-62225919 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 248
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 15, 73

Conread position: 12-330
Cow position: chr2:62818624-62818979 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 252
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 15, 0

Conread position: 14-333
Cow position: chr2:10356594-10356942 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 244
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 40, 180

Conread position: 17-342
Cow position: chr2:51191907-51192233 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 225
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 130, 94

Conread position: 17-383
Cow position: chr2:717436-717811 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 255
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 40, 60

Conread position: 24-350
Cow position: chr2:62674170-62674517 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 240
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 27, 171

Conread position: 25-330
Cow position: chr2:22035697-22035388 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 223
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 35, 92

Conread position: 26-240
Cow position: chr2:61820723-61820951 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 168
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 32, 171

Conread position: 26-330
Cow position: chr2:57509469-57509154 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 223
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 113, 34

Conread position: 26-350
Cow position: chr2:2722171-2721853 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 220
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 31, 113

Conread position: 27-330
Cow position: chr2:53430785-53430468 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 218
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 30, 172

Conread position: 35-284
Cow position: chr2:59380428-59380683 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 180
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 103, 24

Conread position: 44-343
Cow position: chr2:65051081-65050761 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 226
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 28, 76

Conread position: 55-301
Cow position: chr2:23014456-23014706 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 177
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 29, 133

Conread position: 83-327
Cow position: chr2:45231178-45230941 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 190
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 55, 78

Conread position: 130-285
Cow position: chr2:64226379-64226219 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 132
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 74, 5

Conread position: 131-302
Cow position: chr2:50565869-50565694 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 130
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 72, 36

Conread position: 134-327
Cow position: chr2:42897191-42897386 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 148
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 70, 25

Conread position: 135-285
Cow position: chr2:80869025-80868868 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 125
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 69, 46

Conread position: 135-286
Cow position: chr2:19154245-19154093 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 123
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 53, 36

Conread position: 135-319
Cow position: chr2:54890254-54890069 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 148
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 69, 31

Conread position: 135-328
Cow position: chr2:31457424-31457227 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 152
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 104, 46

Conread position: 135-329
Cow position: chr2:47008403-47008608 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 150
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 69, 28

Conread position: 135-329
Cow position: chr2:63288217-63288411 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 153
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 69, 46

Conread position: 135-329
Cow position: chr2:70708059-70708270 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 152
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 25, 0

Conread position: 135-330
Cow position: chr2:39500964-39500769 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 149
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 25, 5

Conread position: 135-352
Cow position: chr2:19494148-19493928 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 152
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 152, 46

Conread position: 138-294
Cow position: chr2:70663948-70663789 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 126
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 65, 43

Conread position: 139-319
Cow position: chr2:66403994-66404180 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 139
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 100, 28

Conread position: 139-333
Cow position: chr2:39807850-39808065 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 164
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 36, 0

Conread position: 140-316
Cow position: chr2:76340724-76340908 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 137
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 64, 24

Conread position: 140-330
Cow position: chr2:49608522-49608328 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 138
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 64, 23

Conread position: 140-330
Cow position: chr2:56102532-56102729 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 150
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 64, 27

Conread position: 143-327
Cow position: chr2:18636828-18636633 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 145
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 61, 38

Conread position: 152-324
Cow position: chr2:80177841-80178020 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 132
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 51, 15

Conread position: 168-324
Cow position: chr2:21698906-21698737 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 136
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 36, 20

Show alignments to all cow chromosomes.