Cow genome map
| Conread name: | rtra01_e11r1.y1 |
| Conread position: | 1-153 |
| Cow position: | chr20:5576910-5576755 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 1-191 |
| Cow position: | chr20:17397129-17397311 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 79, 53 |
| Conread position: | 1-214 |
| Cow position: | chr20:5763159-5763379 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 59, 119 |
| Conread position: | 1-255 |
| Cow position: | chr20:9266971-9267243 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 59, 11 |
| Conread position: | 1-302 |
| Cow position: | chr20:14471437-14471739 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 61, 106 |
| Conread position: | 1-305 |
| Cow position: | chr20:25274158-25274472 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 222 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 59, 43 |
| Conread position: | 1-312 |
| Cow position: | chr20:33178383-33178729 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 244 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 53, 110 |
| Conread position: | 1-319 |
| Cow position: | chr20:32861866-32862202 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 239 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 57, 35 |
| Conread position: | 1-320 |
| Cow position: | chr20:23834250-23833915 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 230 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 151, 59 |
| Conread position: | 1-326 |
| Cow position: | chr20:19266288-19265940 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 247 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 131, 59 |
| Conread position: | 1-330 |
| Cow position: | chr20:10759337-10759686 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 253 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 11, 269 |
| Conread position: | 1-330 |
| Cow position: | chr20:20471918-20471569 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 257 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 59, 30 |
| Conread position: | 1-338 |
| Cow position: | chr20:32668105-32667759 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 256 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 99, 59 |
| Conread position: | 1-339 |
| Cow position: | chr20:18530570-18530217 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 80 |
| Conread position: | 1-342 |
| Cow position: | chr20:15073702-15074064 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 119 |
| Conread position: | 1-377 |
| Cow position: | chr20:14679752-14679347 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 279 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 137, 58 |
| Conread position: | 2-319 |
| Cow position: | chr20:32577788-32578130 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 17, 37 |
| Conread position: | 2-326 |
| Cow position: | chr20:39405894-39405551 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 100, 198 |
| Conread position: | 2-330 |
| Cow position: | chr20:23163770-23164091 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 49 |
| Conread position: | 2-335 |
| Cow position: | chr20:13821445-13821810 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 17, 37 |
| Conread position: | 2-340 |
| Cow position: | chr20:25686214-25686582 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 262 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 26, 90 |
| Conread position: | 2-375 |
| Cow position: | chr20:20350856-20351262 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 279 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 17, 165 |
| Conread position: | 3-320 |
| Cow position: | chr20:7109989-7110327 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 17 |
| Conread position: | 3-350 |
| Cow position: | chr20:26077215-26076842 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 271 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 31, 197 |
| Conread position: | 5-253 |
| Cow position: | chr20:14917416-14917160 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 28, 110 |
| Conread position: | 10-262 |
| Cow position: | chr20:24234280-24234011 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 70, 50 |
| Conread position: | 10-329 |
| Cow position: | chr20:38124013-38123667 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 17-266 |
| Cow position: | chr20:2683641-2683379 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 121, 43 |
| Conread position: | 24-241 |
| Cow position: | chr20:13658731-13658966 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 33, 177 |
| Conread position: | 24-327 |
| Cow position: | chr20:31563862-31564187 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 223 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 33, 254 |
| Conread position: | 24-329 |
| Cow position: | chr20:7803052-7803367 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 7, 18 |
| Conread position: | 24-330 |
| Cow position: | chr20:22920056-22920381 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 24-355 |
| Cow position: | chr20:35843014-35843360 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 11, 56 |
| Conread position: | 34-302 |
| Cow position: | chr20:2801993-2802269 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 104, 26 |
| Conread position: | 38-342 |
| Cow position: | chr20:10850424-10850730 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 19, 76 |
| Conread position: | 39-330 |
| Cow position: | chr20:13712052-13712327 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 18, 121 |
| Conread position: | 40-327 |
| Cow position: | chr20:24868937-24869246 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 232 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 20, 6 |
| Conread position: | 41-330 |
| Cow position: | chr20:22235393-22235093 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 16, 8 |
| Conread position: | 46-327 |
| Cow position: | chr20:15147928-15148231 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 201 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 57-327 |
| Cow position: | chr20:11975050-11975325 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 125, 78 |
| Conread position: | 135-296 |
| Cow position: | chr20:614646-614482 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 69, 45 |
| Conread position: | 135-296 |
| Cow position: | chr20:7539245-7539411 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 69, 13 |
| Conread position: | 135-318 |
| Cow position: | chr20:4359681-4359862 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 69, 39 |
| Conread position: | 135-322 |
| Cow position: | chr20:7600802-7600990 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 69, 46 |
| Conread position: | 135-327 |
| Cow position: | chr20:35897498-35897300 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 69, 53 |
| Conread position: | 135-329 |
| Cow position: | chr20:21714735-21714531 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 49, 32 |
| Conread position: | 135-330 |
| Cow position: | chr20:11340819-11341026 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 46, 29 |
| Conread position: | 135-338 |
| Cow position: | chr20:13048434-13048649 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 69, 46 |
| Conread position: | 137-350 |
| Cow position: | chr20:38817983-38817770 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 67, 35 |
| Conread position: | 138-330 |
| Cow position: | chr20:20557673-20557877 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 66, 43 |
| Conread position: | 140-325 |
| Cow position: | chr20:33363495-33363304 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 48, 18 |
| Conread position: | 140-330 |
| Cow position: | chr20:18100393-18100198 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 98, 27 |
| Conread position: | 140-330 |
| Cow position: | chr20:20352940-20353135 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 64, 27 |
| Conread position: | 140-338 |
| Cow position: | chr20:15760967-15761178 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 141-317 |
| Cow position: | chr20:12041170-12041355 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 63, 44 |
| Conread position: | 141-331 |
| Cow position: | chr20:35797582-35797384 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 96, 26 |
| Conread position: | 168-342 |
| Cow position: | chr20:4892949-4893130 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 11, 0 |
Show alignments to all cow chromosomes.