Cow genome map
| Conread name: | rtra01_e11r1.y1 |
| Conread position: | 1-186 |
| Cow position: | chr21:36371639-36371454 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 137, 59 |
| Conread position: | 1-191 |
| Cow position: | chr21:15239434-15239246 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 148, 59 |
| Conread position: | 1-240 |
| Cow position: | chr21:45923500-45923746 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 100, 57 |
| Conread position: | 1-302 |
| Cow position: | chr21:37845607-37845917 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 44, 61 |
| Conread position: | 1-319 |
| Cow position: | chr21:35997327-35996983 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 249 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 96, 59 |
| Conread position: | 1-324 |
| Cow position: | chr21:34565059-34565407 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 253 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 135, 45 |
| Conread position: | 1-327 |
| Cow position: | chr21:33947098-33947441 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 246 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 106, 59 |
| Conread position: | 1-329 |
| Cow position: | chr21:4276448-4276793 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 253 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 57, 16 |
| Conread position: | 1-329 |
| Cow position: | chr21:8420780-8420455 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 59, 30 |
| Conread position: | 1-331 |
| Cow position: | chr21:24759200-24758868 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 153, 54 |
| Conread position: | 1-333 |
| Cow position: | chr21:42053124-42053468 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 250 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 119, 55 |
| Conread position: | 1-334 |
| Cow position: | chr21:26097249-26097614 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 253 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 18, 52 |
| Conread position: | 1-338 |
| Cow position: | chr21:31576647-31576304 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 57 |
| Conread position: | 1-343 |
| Cow position: | chr21:18378994-18378633 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 34, 52 |
| Conread position: | 1-367 |
| Cow position: | chr21:15741929-15742329 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 287 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 33, 284 |
| Conread position: | 1-384 |
| Cow position: | chr21:23478576-23478978 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 275 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 127, 59 |
| Conread position: | 1-410 |
| Cow position: | chr21:23786187-23785751 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 203 |
| Conread position: | 2-129 |
| Cow position: | chr21:26753646-26753516 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 100 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 2-276 |
| Cow position: | chr21:32904000-32904286 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 55, 77 |
| Conread position: | 2-314 |
| Cow position: | chr21:37344946-37345286 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 34, 184 |
| Conread position: | 2-329 |
| Cow position: | chr21:31662622-31662261 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 260 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 32, 209 |
| Conread position: | 2-336 |
| Cow position: | chr21:23499673-23500031 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 247 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 14, 59 |
| Conread position: | 2-338 |
| Cow position: | chr21:37282455-37282099 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 249 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 17, 191 |
| Conread position: | 2-383 |
| Cow position: | chr21:30897569-30897163 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 266 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 56, 367 |
| Conread position: | 3-319 |
| Cow position: | chr21:17642831-17643159 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 31, 39 |
| Conread position: | 4-333 |
| Cow position: | chr21:4723633-4723276 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 256 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 56, 267 |
| Conread position: | 5-327 |
| Cow position: | chr21:35062234-35061891 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 248 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 133, 55 |
| Conread position: | 5-330 |
| Cow position: | chr21:20160828-20160484 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 234 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 29, 176 |
| Conread position: | 5-333 |
| Cow position: | chr21:38900925-38900570 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 5-354 |
| Cow position: | chr21:24698632-24698267 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 259 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 55, 168 |
| Conread position: | 10-285 |
| Cow position: | chr21:46607443-46607735 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 24, 66 |
| Conread position: | 15-332 |
| Cow position: | chr21:33729572-33729231 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 19, 168 |
| Conread position: | 24-273 |
| Cow position: | chr21:16982007-16981741 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 40, 209 |
| Conread position: | 25-325 |
| Cow position: | chr21:28997771-28998101 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 75, 34 |
| Conread position: | 26-316 |
| Cow position: | chr21:6366708-6366425 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 178, 87 |
| Conread position: | 29-301 |
| Cow position: | chr21:44754652-44754945 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 214 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 29, 5 |
| Conread position: | 35-311 |
| Cow position: | chr21:12087709-12087413 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 27, 45 |
| Conread position: | 78-312 |
| Cow position: | chr21:20426606-20426351 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 79-330 |
| Cow position: | chr21:32665700-32665972 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 59, 228 |
| Conread position: | 80-307 |
| Cow position: | chr21:49662047-49662294 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 58, 197 |
| Conread position: | 132-330 |
| Cow position: | chr21:28626247-28626041 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 56, 26 |
| Conread position: | 135-305 |
| Cow position: | chr21:25800396-25800235 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 147, 46 |
| Conread position: | 135-318 |
| Cow position: | chr21:34237387-34237207 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 68, 42 |
| Conread position: | 135-319 |
| Cow position: | chr21:28944365-28944553 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 69, 23 |
| Conread position: | 135-325 |
| Cow position: | chr21:9353444-9353245 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 69, 38 |
| Conread position: | 135-327 |
| Cow position: | chr21:45330601-45330805 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 69, 29 |
| Conread position: | 135-328 |
| Cow position: | chr21:5597150-5596948 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 69, 41 |
| Conread position: | 135-328 |
| Cow position: | chr21:24865158-24864957 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 69, 46 |
| Conread position: | 135-329 |
| Cow position: | chr21:43357258-43357458 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 69, 29 |
| Conread position: | 135-330 |
| Cow position: | chr21:3818210-3818016 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 70, 53 |
| Conread position: | 135-338 |
| Cow position: | chr21:724886-725100 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 69, 37 |
| Conread position: | 135-352 |
| Cow position: | chr21:29943002-29942788 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 69, 46 |
| Conread position: | 136-338 |
| Cow position: | chr21:37941687-37941895 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 68, 46 |
| Conread position: | 137-329 |
| Cow position: | chr21:17674233-17674435 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 46, 142 |
| Conread position: | 139-286 |
| Cow position: | chr21:24642516-24642366 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 65, 26 |
| Conread position: | 140-330 |
| Cow position: | chr21:24094753-24094944 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 64, 102 |
| Conread position: | 140-330 |
| Cow position: | chr21:36162965-36163163 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 64, 24 |
| Conread position: | 141-330 |
| Cow position: | chr21:47802263-47802460 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 63, 26 |
| Conread position: | 146-329 |
| Cow position: | chr21:33419732-33419914 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 58, 21 |
| Conread position: | 176-330 |
| Cow position: | chr21:17218653-17218816 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 28, 18 |
| Conread position: | 186-330 |
| Cow position: | chr21:31278731-31278579 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 19, 0 |
Show alignments to all cow chromosomes.