Cow genome map
| Conread name: | rtra01_e11r1.y1 |
| Conread position: | 1-178 |
| Cow position: | chr22:19361492-19361670 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 137, 54 |
| Conread position: | 1-234 |
| Cow position: | chr22:15358334-15358080 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 1-236 |
| Cow position: | chr22:18486839-18487075 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 137, 59 |
| Conread position: | 1-245 |
| Cow position: | chr22:33386421-33386677 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 137, 63 |
| Conread position: | 1-302 |
| Cow position: | chr22:25715094-25714774 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 1-310 |
| Cow position: | chr22:39293655-39293994 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 1-313 |
| Cow position: | chr22:41389196-41388868 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 54, 244 |
| Conread position: | 1-317 |
| Cow position: | chr22:26941878-26941544 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 244 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 115, 59 |
| Conread position: | 1-321 |
| Cow position: | chr22:22997565-22997220 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 248 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 59, 238 |
| Conread position: | 1-324 |
| Cow position: | chr22:10683590-10683926 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 234 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 99, 16 |
| Conread position: | 1-327 |
| Cow position: | chr22:13235609-13235282 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 36, 60 |
| Conread position: | 1-327 |
| Cow position: | chr22:23861067-23861407 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 50, 194 |
| Conread position: | 1-327 |
| Cow position: | chr22:44923969-44924326 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 245 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 1-329 |
| Cow position: | chr22:2913366-2913013 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 260 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 53, 83 |
| Conread position: | 1-330 |
| Cow position: | chr22:2388916-2389245 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 238 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 19, 23 |
| Conread position: | 1-330 |
| Cow position: | chr22:26057468-26057123 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 53, 142 |
| Conread position: | 1-330 |
| Cow position: | chr22:42933403-42933755 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 243 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 128, 60 |
| Conread position: | 1-333 |
| Cow position: | chr22:43044080-43044434 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 245 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 2-199 |
| Cow position: | chr22:12535695-12535891 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 136, 20 |
| Conread position: | 2-240 |
| Cow position: | chr22:43352101-43352336 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 56, 75 |
| Conread position: | 2-268 |
| Cow position: | chr22:6574833-6574542 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 32, 212 |
| Conread position: | 2-327 |
| Cow position: | chr22:11778522-11778874 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 249 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 33, 86 |
| Conread position: | 2-369 |
| Cow position: | chr22:29441177-29441557 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 268 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 100, 49 |
| Conread position: | 2-463 |
| Cow position: | chr22:4651265-4650783 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 182 |
| Conread position: | 4-183 |
| Cow position: | chr22:139215-139398 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 51, 116 |
| Conread position: | 4-282 |
| Cow position: | chr22:23580760-23581051 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 44, 61 |
| Conread position: | 4-329 |
| Cow position: | chr22:24185336-24185672 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 27, 32 |
| Conread position: | 4-330 |
| Cow position: | chr22:9521230-9520883 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 247 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 24, 314 |
| Conread position: | 5-329 |
| Cow position: | chr22:26316541-26316213 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 29, 169 |
| Conread position: | 5-330 |
| Cow position: | chr22:1609685-1610023 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 227 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 53, 66 |
| Conread position: | 5-330 |
| Cow position: | chr22:11257663-11258003 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 240 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 133, 52 |
| Conread position: | 6-158 |
| Cow position: | chr22:9466693-9466541 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 132, 52 |
| Conread position: | 6-286 |
| Cow position: | chr22:33917833-33918118 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 211 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 118, 52 |
| Conread position: | 6-327 |
| Cow position: | chr22:534583-534229 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 28, 203 |
| Conread position: | 6-330 |
| Cow position: | chr22:4292831-4292506 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 218 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 23, 52 |
| Conread position: | 10-327 |
| Cow position: | chr22:7301756-7302109 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 250 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 25-318 |
| Cow position: | chr22:44514692-44514993 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 208 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 92, 35 |
| Conread position: | 27-342 |
| Cow position: | chr22:19047754-19048081 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 31, 245 |
| Conread position: | 39-330 |
| Cow position: | chr22:24030951-24031244 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 18, 66 |
| Conread position: | 58-327 |
| Cow position: | chr22:14820538-14820815 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 102, 90 |
| Conread position: | 135-304 |
| Cow position: | chr22:19738639-19738816 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 69, 52 |
| Conread position: | 135-327 |
| Cow position: | chr22:19775498-19775689 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 69, 33 |
| Conread position: | 135-329 |
| Cow position: | chr22:2476277-2476475 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 69, 40 |
| Conread position: | 135-329 |
| Cow position: | chr22:34953743-34953534 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 135-332 |
| Cow position: | chr22:33415086-33415282 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 69, 113 |
| Conread position: | 135-333 |
| Cow position: | chr22:6215626-6215824 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 69, 30 |
| Conread position: | 135-338 |
| Cow position: | chr22:5337667-5337875 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 69, 39 |
| Conread position: | 135-338 |
| Cow position: | chr22:11745973-11746181 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 69, 41 |
| Conread position: | 135-339 |
| Cow position: | chr22:4161678-4161886 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 47, 74 |
| Conread position: | 135-362 |
| Cow position: | chr22:44835580-44835341 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 69, 52 |
| Conread position: | 138-320 |
| Cow position: | chr22:23618371-23618559 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 66, 48 |
| Conread position: | 139-330 |
| Cow position: | chr22:31870322-31870514 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 56, 28 |
| Conread position: | 139-330 |
| Cow position: | chr22:32661438-32661249 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 43, 28 |
| Conread position: | 140-298 |
| Cow position: | chr22:4026534-4026376 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 99, 25 |
| Conread position: | 140-330 |
| Cow position: | chr22:34476074-34476267 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 42, 27 |
| Conread position: | 144-330 |
| Cow position: | chr22:9372446-9372253 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 24, 140 |
| Conread position: | 146-352 |
| Cow position: | chr22:14844498-14844286 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 58, 21 |
Show alignments to all cow chromosomes.