Cow genome map
| Conread name: | rtra01_e11r1.y1 |
| Conread position: | 1-132 |
| Cow position: | chr23:7611356-7611231 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 1-164 |
| Cow position: | chr23:14840418-14840584 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 54, 103 |
| Conread position: | 1-184 |
| Cow position: | chr23:20585607-20585790 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 137, 56 |
| Conread position: | 1-198 |
| Cow position: | chr23:23192061-23192256 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 137, 43 |
| Conread position: | 1-256 |
| Cow position: | chr23:40651378-40651646 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 192 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 22, 17 |
| Conread position: | 1-262 |
| Cow position: | chr23:16793676-16793408 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 136, 59 |
| Conread position: | 1-286 |
| Cow position: | chr23:23471003-23470729 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 137, 45 |
| Conread position: | 1-319 |
| Cow position: | chr23:11434166-11434507 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 78 |
| Conread position: | 1-319 |
| Cow position: | chr23:37223979-37224317 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 246 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 113, 53 |
| Conread position: | 1-319 |
| Cow position: | chr23:41589828-41590160 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 137, 54 |
| Conread position: | 1-321 |
| Cow position: | chr23:18821293-18821611 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 111, 16 |
| Conread position: | 1-324 |
| Cow position: | chr23:19636167-19636519 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 255 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 30, 62 |
| Conread position: | 1-327 |
| Cow position: | chr23:29272209-29271858 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 247 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 51, 126 |
| Conread position: | 1-338 |
| Cow position: | chr23:20753101-20752741 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 263 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 45, 55 |
| Conread position: | 1-339 |
| Cow position: | chr23:40525889-40526238 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 114 |
| Conread position: | 1-340 |
| Cow position: | chr23:21631309-21630964 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 18, 60 |
| Conread position: | 1-350 |
| Cow position: | chr23:5389793-5389419 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 260 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 59, 30 |
| Conread position: | 1-372 |
| Cow position: | chr23:8930043-8930421 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 261 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 57, 96 |
| Conread position: | 2-240 |
| Cow position: | chr23:18963655-18963890 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 34, 18 |
| Conread position: | 2-319 |
| Cow position: | chr23:791941-792283 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 242 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 78, 8 |
| Conread position: | 2-330 |
| Cow position: | chr23:10414930-10415288 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 3-303 |
| Cow position: | chr23:30308000-30307676 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 242 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 57, 102 |
| Conread position: | 3-316 |
| Cow position: | chr23:15872599-15872949 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 247 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 15, 205 |
| Conread position: | 4-253 |
| Cow position: | chr23:17000798-17000554 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 54, 96 |
| Conread position: | 4-325 |
| Cow position: | chr23:14126655-14126318 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 234 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 132, 45 |
| Conread position: | 6-339 |
| Cow position: | chr23:3140939-3140593 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 132, 34 |
| Conread position: | 9-235 |
| Cow position: | chr23:27290692-27290937 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 10-317 |
| Cow position: | chr23:28721150-28721448 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 48, 82 |
| Conread position: | 10-319 |
| Cow position: | chr23:11994806-11994480 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 24, 12 |
| Conread position: | 10-350 |
| Cow position: | chr23:22660501-22660853 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 259 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 129, 50 |
| Conread position: | 11-240 |
| Cow position: | chr23:26861519-26861296 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 178, 32 |
| Conread position: | 13-327 |
| Cow position: | chr23:9711513-9711850 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 230 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 87, 58 |
| Conread position: | 24-232 |
| Cow position: | chr23:6031947-6031725 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 24-300 |
| Cow position: | chr23:2531277-2531569 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 38, 176 |
| Conread position: | 26-313 |
| Cow position: | chr23:7321745-7322042 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 214 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 105, 30 |
| Conread position: | 28-330 |
| Cow position: | chr23:3876901-3877229 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 218 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 28-344 |
| Cow position: | chr23:21446155-21445848 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 87, 27 |
| Conread position: | 29-333 |
| Cow position: | chr23:7550586-7550914 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 7, 83 |
| Conread position: | 40-269 |
| Cow position: | chr23:24515834-24516056 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 98, 20 |
| Conread position: | 44-327 |
| Cow position: | chr23:645379-645072 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 13, 77 |
| Conread position: | 46-330 |
| Cow position: | chr23:16609759-16610072 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 56, 156 |
| Conread position: | 47-302 |
| Cow position: | chr23:10424877-10424632 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 91, 52 |
| Conread position: | 53-342 |
| Cow position: | chr23:20781863-20781551 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 10, 305 |
| Conread position: | 58-240 |
| Cow position: | chr23:16072294-16072484 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 135-318 |
| Cow position: | chr23:38248832-38248650 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 106, 46 |
| Conread position: | 135-319 |
| Cow position: | chr23:31607212-31607411 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 15, 57 |
| Conread position: | 135-325 |
| Cow position: | chr23:6592761-6592950 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 47, 32 |
| Conread position: | 135-330 |
| Cow position: | chr23:16237313-16237522 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 69, 52 |
| Conread position: | 135-330 |
| Cow position: | chr23:19002124-19002330 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 47, 28 |
| Conread position: | 135-332 |
| Cow position: | chr23:37065781-37065573 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 69, 32 |
| Conread position: | 135-338 |
| Cow position: | chr23:7751120-7750919 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 69, 29 |
| Conread position: | 135-338 |
| Cow position: | chr23:13515111-13514910 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 68, 31 |
| Conread position: | 135-338 |
| Cow position: | chr23:20171515-20171307 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 96, 46 |
| Conread position: | 135-353 |
| Cow position: | chr23:12408571-12408797 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 69, 12 |
| Conread position: | 138-317 |
| Cow position: | chr23:7221073-7221263 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 66, 49 |
| Conread position: | 139-322 |
| Cow position: | chr23:3910068-3910254 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 65, 49 |
| Conread position: | 139-330 |
| Cow position: | chr23:32961431-32961630 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 65, 28 |
| Conread position: | 139-333 |
| Cow position: | chr23:5617512-5617314 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 65, 28 |
| Conread position: | 140-312 |
| Cow position: | chr23:13359746-13359576 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 64, 27 |
| Conread position: | 140-319 |
| Cow position: | chr23:4810687-4810499 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 140-330 |
| Cow position: | chr23:31601518-31601720 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 63, 24 |
| Conread position: | 145-330 |
| Cow position: | chr23:12896674-12896864 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 59, 22 |
| Conread position: | 152-330 |
| Cow position: | chr23:24505171-24504987 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 52, 36 |
Show alignments to all cow chromosomes.