Cow genome map
| Conread name: | rtra01_e11r1.y1 |
| Conread position: | 1-119 |
| Cow position: | chr24:10546137-10546021 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 1-158 |
| Cow position: | chr24:19754640-19754483 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 137, 59 |
| Conread position: | 1-240 |
| Cow position: | chr24:35827805-35827551 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 1-253 |
| Cow position: | chr24:32085863-32086122 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 61, 42 |
| Conread position: | 1-302 |
| Cow position: | chr24:28335495-28335797 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 59, 104 |
| Conread position: | 1-302 |
| Cow position: | chr24:28349643-28349328 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 1-302 |
| Cow position: | chr24:39350148-39350464 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 238 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 33, 80 |
| Conread position: | 1-312 |
| Cow position: | chr24:32894459-32894143 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 57, 95 |
| Conread position: | 1-313 |
| Cow position: | chr24:12993109-12992784 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 32, 72 |
| Conread position: | 1-327 |
| Cow position: | chr24:32758694-32759055 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 53, 63 |
| Conread position: | 1-328 |
| Cow position: | chr24:39742882-39742539 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 245 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 59, 76 |
| Conread position: | 1-330 |
| Cow position: | chr24:6507703-6508051 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 59 |
| Conread position: | 1-330 |
| Cow position: | chr24:25678091-25677746 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 266 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 33, 47 |
| Conread position: | 1-330 |
| Cow position: | chr24:27683389-27683730 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 247 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 61, 142 |
| Conread position: | 1-330 |
| Cow position: | chr24:34368939-34369294 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 114 |
| Conread position: | 1-330 |
| Cow position: | chr24:39123910-39123581 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 61, 107 |
| Conread position: | 1-332 |
| Cow position: | chr24:14337796-14337442 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 246 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 97, 12 |
| Conread position: | 1-333 |
| Cow position: | chr24:28279692-28279353 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 183 |
| Conread position: | 1-338 |
| Cow position: | chr24:1271822-1272167 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 254 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 121, 40 |
| Conread position: | 1-338 |
| Cow position: | chr24:27054479-27054110 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 244 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 33, 321 |
| Conread position: | 1-338 |
| Cow position: | chr24:32158208-32158565 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 12, 60 |
| Conread position: | 2-324 |
| Cow position: | chr24:25228997-25229339 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 194 |
| Conread position: | 2-326 |
| Cow position: | chr24:18243400-18243749 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 31, 207 |
| Conread position: | 2-328 |
| Cow position: | chr24:39808196-39807872 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 6, 59 |
| Conread position: | 2-330 |
| Cow position: | chr24:35836180-35836528 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 234 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 102, 142 |
| Conread position: | 3-302 |
| Cow position: | chr24:44074390-44074686 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 54, 47 |
| Conread position: | 3-327 |
| Cow position: | chr24:42943053-42943407 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 254 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 3-355 |
| Cow position: | chr24:32669320-32668966 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 254 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 16, 111 |
| Conread position: | 4-330 |
| Cow position: | chr24:36801439-36801115 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 134, 33 |
| Conread position: | 4-335 |
| Cow position: | chr24:35569242-35568894 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 247 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 77, 58 |
| Conread position: | 5-330 |
| Cow position: | chr24:18741508-18741859 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 26, 182 |
| Conread position: | 6-316 |
| Cow position: | chr24:35529970-35529649 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 231 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 114, 54 |
| Conread position: | 6-330 |
| Cow position: | chr24:3493947-3493605 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 238 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 28, 175 |
| Conread position: | 6-330 |
| Cow position: | chr24:43432853-43432514 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 233 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 28, 75 |
| Conread position: | 6-400 |
| Cow position: | chr24:40091517-40091937 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 295 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 36, 55 |
| Conread position: | 10-198 |
| Cow position: | chr24:19612065-19611879 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 128, 28 |
| Conread position: | 10-330 |
| Cow position: | chr24:19658595-19658259 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 23, 48 |
| Conread position: | 17-334 |
| Cow position: | chr24:8021601-8021282 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 34, 44 |
| Conread position: | 25-327 |
| Cow position: | chr24:23685023-23685346 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 37, 192 |
| Conread position: | 37-266 |
| Cow position: | chr24:12263677-12263924 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 45-335 |
| Cow position: | chr24:39955027-39955339 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 231 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 17, 135 |
| Conread position: | 70-327 |
| Cow position: | chr24:39259157-39258879 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 135-318 |
| Cow position: | chr24:6665566-6665758 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 69, 46 |
| Conread position: | 135-320 |
| Cow position: | chr24:30860549-30860359 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 69, 46 |
| Conread position: | 135-325 |
| Cow position: | chr24:14617567-14617376 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 69, 46 |
| Conread position: | 135-327 |
| Cow position: | chr24:28028795-28028990 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 69, 47 |
| Conread position: | 135-330 |
| Cow position: | chr24:27052582-27052780 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 104, 32 |
| Conread position: | 135-338 |
| Cow position: | chr24:26846361-26846576 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 69, 42 |
| Conread position: | 135-338 |
| Cow position: | chr24:37204966-37205174 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 69, 46 |
| Conread position: | 135-338 |
| Cow position: | chr24:44041099-44041308 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 69, 32 |
| Conread position: | 140-338 |
| Cow position: | chr24:27267541-27267337 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 64, 24 |
| Conread position: | 158-342 |
| Cow position: | chr24:36730395-36730200 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 15, 0 |
Show alignments to all cow chromosomes.