Cow genome map
| Conread name: | rtra01_e11r1.y1 |
| Conread position: | 1-192 |
| Cow position: | chr27:19083852-19083655 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 59, 120 |
| Conread position: | 1-228 |
| Cow position: | chr27:11356673-11356450 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 137, 59 |
| Conread position: | 1-240 |
| Cow position: | chr27:23662728-23662486 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 99, 59 |
| Conread position: | 1-294 |
| Cow position: | chr27:9562473-9562184 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 59, 113 |
| Conread position: | 1-294 |
| Cow position: | chr27:24225034-24224726 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 56, 78 |
| Conread position: | 1-299 |
| Cow position: | chr27:12244261-12243953 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 57, 109 |
| Conread position: | 1-325 |
| Cow position: | chr27:14937565-14937217 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 245 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 59, 334 |
| Conread position: | 1-329 |
| Cow position: | chr27:20766088-20765744 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 256 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 10, 20 |
| Conread position: | 1-329 |
| Cow position: | chr27:29039077-29038721 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 257 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 28, 120 |
| Conread position: | 1-330 |
| Cow position: | chr27:21138695-21139045 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 258 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 27, 60 |
| Conread position: | 1-330 |
| Cow position: | chr27:26441183-26440838 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 264 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 59, 72 |
| Conread position: | 1-332 |
| Cow position: | chr27:13005714-13006054 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 19 |
| Conread position: | 1-347 |
| Cow position: | chr27:27053160-27053535 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 53, 217 |
| Conread position: | 3-319 |
| Cow position: | chr27:24341771-24342113 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 252 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 57, 193 |
| Conread position: | 4-273 |
| Cow position: | chr27:23600140-23600424 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 199 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 54, 198 |
| Conread position: | 4-302 |
| Cow position: | chr27:31251448-31251139 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 15, 169 |
| Conread position: | 5-330 |
| Cow position: | chr27:7958962-7958615 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 229 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 31, 178 |
| Conread position: | 10-217 |
| Cow position: | chr27:21681454-21681237 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 45, 123 |
| Conread position: | 10-330 |
| Cow position: | chr27:8048861-8048519 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 97, 25 |
| Conread position: | 15-329 |
| Cow position: | chr27:4664366-4664689 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 31 |
| Conread position: | 25-321 |
| Cow position: | chr27:25471028-25471352 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 233 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 35, 92 |
| Conread position: | 28-330 |
| Cow position: | chr27:21349851-21349528 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 23, 117 |
| Conread position: | 31-330 |
| Cow position: | chr27:26936001-26935698 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 35, 110 |
| Conread position: | 46-330 |
| Cow position: | chr27:22418830-22418546 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 189, 47 |
| Conread position: | 63-328 |
| Cow position: | chr27:31372339-31372075 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 66, 29 |
| Conread position: | 135-302 |
| Cow position: | chr27:6037143-6037312 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 69, 26 |
| Conread position: | 135-327 |
| Cow position: | chr27:8430418-8430222 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 71, 31 |
| Conread position: | 135-330 |
| Cow position: | chr27:490916-491107 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 69, 41 |
| Conread position: | 135-330 |
| Cow position: | chr27:23483247-23483443 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 69, 28 |
| Conread position: | 135-333 |
| Cow position: | chr27:12429420-12429631 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 69, 23 |
| Conread position: | 136-327 |
| Cow position: | chr27:19577695-19577891 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 68, 45 |
| Conread position: | 138-328 |
| Cow position: | chr27:25998726-25998923 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 73, 50 |
| Conread position: | 139-327 |
| Cow position: | chr27:19543884-19543692 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 65, 25 |
| Conread position: | 140-302 |
| Cow position: | chr27:18031038-18030870 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 64, 24 |
| Conread position: | 140-302 |
| Cow position: | chr27:20592006-20592173 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 64, 18 |
| Conread position: | 140-318 |
| Cow position: | chr27:1142010-1141827 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 34, 101 |
| Conread position: | 140-328 |
| Cow position: | chr27:17472834-17473031 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 141-330 |
| Cow position: | chr27:2012078-2011883 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 141-330 |
| Cow position: | chr27:16620014-16620211 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 97, 26 |
| Conread position: | 178-330 |
| Cow position: | chr27:27388965-27388808 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 10, 0 |
Show alignments to all cow chromosomes.