Cow genome map
| Conread name: | rtra01_e11r1.y1 |
| Conread position: | 1-121 |
| Cow position: | chr28:25340368-25340248 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 53, 112 |
| Conread position: | 1-132 |
| Cow position: | chr28:8336058-8335925 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 1-171 |
| Cow position: | chr28:31165886-31166061 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 59, 150 |
| Conread position: | 1-194 |
| Cow position: | chr28:1202148-1202341 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 137, 59 |
| Conread position: | 1-205 |
| Cow position: | chr28:12999191-12998985 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 33, 57 |
| Conread position: | 1-240 |
| Cow position: | chr28:6643186-6643437 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 50, 112 |
| Conread position: | 1-272 |
| Cow position: | chr28:21570287-21569991 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 1-295 |
| Cow position: | chr28:15081825-15082143 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 50, 197 |
| Conread position: | 1-302 |
| Cow position: | chr28:10035483-10035180 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 228 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 109, 30 |
| Conread position: | 1-303 |
| Cow position: | chr28:12046816-12047128 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 225 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 32, 217 |
| Conread position: | 1-322 |
| Cow position: | chr28:3769574-3769905 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 137, 16 |
| Conread position: | 1-324 |
| Cow position: | chr28:4274747-4275080 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 99, 59 |
| Conread position: | 1-327 |
| Cow position: | chr28:9176658-9177009 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 59, 12 |
| Conread position: | 1-327 |
| Cow position: | chr28:21873856-21873517 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 180 |
| Conread position: | 1-338 |
| Cow position: | chr28:13693846-13693481 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 264 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 137, 58 |
| Conread position: | 1-339 |
| Cow position: | chr28:10674769-10674429 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 234 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 25, 112 |
| Conread position: | 1-339 |
| Cow position: | chr28:31971690-31972014 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 51 |
| Conread position: | 2-137 |
| Cow position: | chr28:20275224-20275088 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 58, 33 |
| Conread position: | 2-318 |
| Cow position: | chr28:6486691-6486347 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 238 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 2-325 |
| Cow position: | chr28:13726259-13725909 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 2-327 |
| Cow position: | chr28:34199012-34199353 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 71, 112 |
| Conread position: | 2-330 |
| Cow position: | chr28:16687121-16686775 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 11 |
| Conread position: | 4-276 |
| Cow position: | chr28:4098924-4098646 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 204 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 30, 112 |
| Conread position: | 4-330 |
| Cow position: | chr28:23621631-23621290 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 176 |
| Conread position: | 8-338 |
| Cow position: | chr28:16349980-16350311 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 231 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 25, 12 |
| Conread position: | 9-333 |
| Cow position: | chr28:20963464-20963793 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 96, 29 |
| Conread position: | 10-193 |
| Cow position: | chr28:5406642-5406458 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 97, 50 |
| Conread position: | 12-326 |
| Cow position: | chr28:17153839-17153528 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 70, 48 |
| Conread position: | 24-319 |
| Cow position: | chr28:13936471-13936169 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 33, 91 |
| Conread position: | 24-330 |
| Cow position: | chr28:10641960-10642277 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 32 |
| Conread position: | 26-319 |
| Cow position: | chr28:22583683-22583385 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 16, 81 |
| Conread position: | 26-319 |
| Cow position: | chr28:34636737-34636431 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 219 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 32, 173 |
| Conread position: | 32-330 |
| Cow position: | chr28:22351546-22351235 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 25, 66 |
| Conread position: | 42-342 |
| Cow position: | chr28:18462557-18462883 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 229 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 96, 18 |
| Conread position: | 135-308 |
| Cow position: | chr28:25825927-25826107 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 69, 46 |
| Conread position: | 135-324 |
| Cow position: | chr28:17625190-17625386 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 69, 46 |
| Conread position: | 135-327 |
| Cow position: | chr28:2340477-2340276 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 69, 46 |
| Conread position: | 135-327 |
| Cow position: | chr28:14493483-14493287 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 49, 35 |
| Conread position: | 135-327 |
| Cow position: | chr28:15688982-15688786 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 69, 40 |
| Conread position: | 135-328 |
| Cow position: | chr28:12942318-12942129 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 155 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 68, 46 |
| Conread position: | 135-329 |
| Cow position: | chr28:32300418-32300617 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 68, 41 |
| Conread position: | 135-330 |
| Cow position: | chr28:7607174-7606967 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 69, 46 |
| Conread position: | 135-330 |
| Cow position: | chr28:20265336-20265135 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 50, 180 |
| Conread position: | 135-330 |
| Cow position: | chr28:26784523-26784725 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 69, 30 |
| Conread position: | 135-330 |
| Cow position: | chr28:31871804-31872005 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 28, 54 |
| Conread position: | 135-338 |
| Cow position: | chr28:30995222-30995015 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 69, 38 |
| Conread position: | 139-330 |
| Cow position: | chr28:31110066-31110263 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 64, 28 |
| Conread position: | 139-353 |
| Cow position: | chr28:10745150-10744930 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 64, 25 |
| Conread position: | 145-341 |
| Cow position: | chr28:16386576-16386775 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 59, 22 |
| Conread position: | 152-296 |
| Cow position: | chr28:30002993-30003144 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 175-331 |
| Cow position: | chr28:7372344-7372510 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 13, 0 |
Show alignments to all cow chromosomes.