Cow genome map
| Conread name: | rtra01_e11r1.y1 |
| Conread position: | 1-178 |
| Cow position: | chr29:16055042-16055219 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 137, 59 |
| Conread position: | 1-226 |
| Cow position: | chr29:24604046-24604272 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 33, 120 |
| Conread position: | 1-240 |
| Cow position: | chr29:27285861-27285628 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 96, 57 |
| Conread position: | 1-241 |
| Cow position: | chr29:26299059-26298818 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 25, 16 |
| Conread position: | 1-276 |
| Cow position: | chr29:709043-709330 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 32, 182 |
| Conread position: | 1-302 |
| Cow position: | chr29:39023248-39023572 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 241 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 31, 207 |
| Conread position: | 1-328 |
| Cow position: | chr29:29302569-29302917 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 251 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 59, 193 |
| Conread position: | 1-329 |
| Cow position: | chr29:37719975-37719648 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 240, 16 |
| Conread position: | 1-330 |
| Cow position: | chr29:13634208-13634565 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 62, 115 |
| Conread position: | 1-332 |
| Cow position: | chr29:17543530-17543183 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 256 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 57, 78 |
| Conread position: | 1-343 |
| Cow position: | chr29:4367816-4367442 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 268 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 19, 211 |
| Conread position: | 2-300 |
| Cow position: | chr29:17339216-17339529 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 17, 59 |
| Conread position: | 2-327 |
| Cow position: | chr29:2885365-2885709 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 34, 315 |
| Conread position: | 2-327 |
| Cow position: | chr29:32655346-32655686 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 246 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 26, 42 |
| Conread position: | 2-390 |
| Cow position: | chr29:32809528-32809128 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 278 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 17, 104 |
| Conread position: | 3-319 |
| Cow position: | chr29:13554224-13553878 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 253 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 71, 194 |
| Conread position: | 4-327 |
| Cow position: | chr29:12783877-12784218 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 95, 53 |
| Conread position: | 6-191 |
| Cow position: | chr29:14758778-14758961 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 132, 54 |
| Conread position: | 6-239 |
| Cow position: | chr29:41083233-41082992 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 52, 185 |
| Conread position: | 6-315 |
| Cow position: | chr29:40298935-40299257 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 28, 109 |
| Conread position: | 7-331 |
| Cow position: | chr29:32644995-32644648 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 47, 182 |
| Conread position: | 8-333 |
| Cow position: | chr29:24952771-24952418 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 241 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 10-327 |
| Cow position: | chr29:18695333-18694995 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 11-302 |
| Cow position: | chr29:19509026-19508726 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 127, 49 |
| Conread position: | 11-327 |
| Cow position: | chr29:11634903-11634560 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 33, 191 |
| Conread position: | 24-314 |
| Cow position: | chr29:16359687-16359364 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 23, 84 |
| Conread position: | 26-318 |
| Cow position: | chr29:2588826-2589141 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 31, 218 |
| Conread position: | 26-333 |
| Cow position: | chr29:134240-133924 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 223 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 32, 106 |
| Conread position: | 27-310 |
| Cow position: | chr29:6472371-6472072 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 34, 84 |
| Conread position: | 85-333 |
| Cow position: | chr29:8144228-8143967 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 54, 100 |
| Conread position: | 111-342 |
| Cow position: | chr29:16083091-16082852 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 25, 84 |
| Conread position: | 135-302 |
| Cow position: | chr29:21534741-21534913 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 63, 46 |
| Conread position: | 135-325 |
| Cow position: | chr29:7666094-7666289 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 68, 5 |
| Conread position: | 135-327 |
| Cow position: | chr29:30812683-30812488 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 69, 22 |
| Conread position: | 135-329 |
| Cow position: | chr29:12004826-12005028 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 38, 29 |
| Conread position: | 135-338 |
| Cow position: | chr29:16657625-16657416 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 69, 30 |
| Conread position: | 135-342 |
| Cow position: | chr29:478042-477831 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 69, 46 |
| Conread position: | 136-329 |
| Cow position: | chr29:18338607-18338810 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 68, 51 |
| Conread position: | 138-319 |
| Cow position: | chr29:44135528-44135715 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 66, 43 |
| Conread position: | 140-330 |
| Cow position: | chr29:603385-603573 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 63, 26 |
Show alignments to all cow chromosomes.