Cow genome map

Conread name: rtra01_e11r1.y1

Conread position: 1-128
Cow position:
Alignm length: 131
Alignm identity: 100
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 1-137
Cow position:
Alignm length: 139
Alignm identity: 105
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 59, 0

Conread position: 1-193
Cow position:
Alignm length: 197
Alignm identity: 139
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 62, 145

Conread position: 1-205
Cow position:
Alignm length: 208
Alignm identity: 146
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 59, 138

Conread position: 1-240
Cow position:
Alignm length: 250
Alignm identity: 169
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 59, 19

Conread position: 1-264
Cow position:
Alignm length: 285
Alignm identity: 198
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 118, 59

Conread position: 1-276
Cow position:
Alignm length: 306
Alignm identity: 209
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 45, 59

Conread position: 1-298
Cow position:
Alignm length: 308
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 119

Conread position: 1-302
Cow position:
Alignm length: 310
Alignm identity: 209
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 132, 21

Conread position: 1-302
Cow position:
Alignm length: 319
Alignm identity: 224
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 56, 108

Conread position: 1-311
Cow position:
Alignm length: 322
Alignm identity: 214
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 54, 75

Conread position: 1-313
Cow position:
Alignm length: 342
Alignm identity: 240
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 137, 59

Conread position: 1-319
Cow position:
Alignm length: 339
Alignm identity: 224
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 93, 55

Conread position: 1-319
Cow position:
Alignm length: 350
Alignm identity: 247
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 57, 0

Conread position: 1-319
Cow position:
Alignm length: 342
Alignm identity: 233
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 18, 81

Conread position: 1-322
Cow position:
Alignm length: 337
Alignm identity: 238
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 99, 59

Conread position: 1-324
Cow position:
Alignm length: 347
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 119

Conread position: 1-325
Cow position:
Alignm length: 352
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 107

Conread position: 1-325
Cow position:
Alignm length: 352
Alignm identity: 255
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 137, 42

Conread position: 1-325
Cow position:
Alignm length: 341
Alignm identity: 234
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 33, 183

Conread position: 1-327
Cow position:
Alignm length: 355
Alignm identity: 256
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 34, 0

Conread position: 1-327
Cow position:
Alignm length: 341
Alignm identity: 234
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 116, 55

Conread position: 1-329
Cow position:
Alignm length: 354
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 58

Conread position: 1-330
Cow position:
Alignm length: 348
Alignm identity: 238
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 146, 55

Conread position: 1-330
Cow position:
Alignm length: 349
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 152

Conread position: 1-330
Cow position:
Alignm length: 350
Alignm identity: 243
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 57, 134

Conread position: 1-330
Cow position:
Alignm length: 348
Alignm identity: 241
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 33, 41

Conread position: 1-330
Cow position:
Alignm length: 353
Alignm identity: 250
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 59, 117

Conread position: 1-330
Cow position:
Alignm length: 354
Alignm identity: 238
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 54, 122

Conread position: 1-330
Cow position:
Alignm length: 366
Alignm identity: 268
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 59, 203

Conread position: 1-330
Cow position:
Alignm length: 347
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 34

Conread position: 1-330
Cow position:
Alignm length: 347
Alignm identity: 244
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 94, 54

Conread position: 1-333
Cow position:
Alignm length: 361
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 184

Conread position: 1-333
Cow position:
Alignm length: 357
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 113

Conread position: 1-335
Cow position:
Alignm length: 360
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 194

Conread position: 1-336
Cow position:
Alignm length: 368
Alignm identity: 255
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 33, 202

Conread position: 1-342
Cow position:
Alignm length: 355
Alignm identity: 245
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 205, 59

Conread position: 2-269
Cow position:
Alignm length: 294
Alignm identity: 211
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 31, 20

Conread position: 2-302
Cow position:
Alignm length: 320
Alignm identity: 229
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 58, 41

Conread position: 2-319
Cow position:
Alignm length: 345
Alignm identity: 243
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 58, 43

Conread position: 2-330
Cow position:
Alignm length: 362
Alignm identity: 259
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 17, 201

Conread position: 2-330
Cow position:
Alignm length: 351
Alignm identity: 243
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 16, 59

Conread position: 2-330
Cow position:
Alignm length: 345
Alignm identity: 235
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 17, 91

Conread position: 3-137
Cow position:
Alignm length: 137
Alignm identity: 105
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 53, 0

Conread position: 3-302
Cow position:
Alignm length: 331
Alignm identity: 238
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 91, 25

Conread position: 3-331
Cow position:
Alignm length: 348
Alignm identity: 228
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 55, 170

Conread position: 4-183
Cow position:
Alignm length: 186
Alignm identity: 136
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 89, 56

Conread position: 4-330
Cow position:
Alignm length: 350
Alignm identity: 240
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 16, 57

Conread position: 4-330
Cow position:
Alignm length: 351
Alignm identity: 249
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 134, 56

Conread position: 4-333
Cow position:
Alignm length: 360
Alignm identity: 262
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 116, 56

Conread position: 5-237
Cow position:
Alignm length: 238
Alignm identity: 160
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 29, 127

Conread position: 5-302
Cow position:
Alignm length: 313
Alignm identity: 214
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 199, 55

Conread position: 5-302
Cow position:
Alignm length: 310
Alignm identity: 209
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 121, 14

Conread position: 5-329
Cow position:
Alignm length: 350
Alignm identity: 231
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 26, 270

Conread position: 5-333
Cow position:
Alignm length: 347
Alignm identity: 238
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 29, 138

Conread position: 7-245
Cow position:
Alignm length: 253
Alignm identity: 180
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 22, 170

Conread position: 7-310
Cow position:
Alignm length: 319
Alignm identity: 223
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 20, 13

Conread position: 10-230
Cow position:
Alignm length: 236
Alignm identity: 168
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 94, 0

Conread position: 10-240
Cow position:
Alignm length: 249
Alignm identity: 181
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 48, 69

Conread position: 10-298
Cow position:
Alignm length: 300
Alignm identity: 217
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 88, 50

Conread position: 10-301
Cow position:
Alignm length: 322
Alignm identity: 229
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 48, 0

Conread position: 10-329
Cow position:
Alignm length: 330
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 87

Conread position: 10-332
Cow position:
Alignm length: 339
Alignm identity: 240
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 50, 91

Conread position: 10-333
Cow position:
Alignm length: 361
Alignm identity: 265
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 48, 171

Conread position: 10-379
Cow position:
Alignm length: 402
Alignm identity: 268
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 105, 40

Conread position: 11-137
Cow position:
Alignm length: 127
Alignm identity: 97
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 49, 0

Conread position: 11-240
Cow position:
Alignm length: 234
Alignm identity: 162
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 49, 150

Conread position: 12-325
Cow position:
Alignm length: 335
Alignm identity: 228
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 95, 58

Conread position: 12-333
Cow position:
Alignm length: 349
Alignm identity: 245
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 48, 9

Conread position: 14-355
Cow position:
Alignm length: 355
Alignm identity: 254
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 122, 46

Conread position: 17-329
Cow position:
Alignm length: 327
Alignm identity: 210
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 34, 90

Conread position: 17-336
Cow position:
Alignm length: 329
Alignm identity: 224
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 45, 18

Conread position: 26-240
Cow position:
Alignm length: 220
Alignm identity: 162
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 113, 29

Conread position: 33-329
Cow position:
Alignm length: 314
Alignm identity: 220
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 106, 23

Conread position: 35-330
Cow position:
Alignm length: 326
Alignm identity: 234
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 26, 155

Conread position: 36-240
Cow position:
Alignm length: 214
Alignm identity: 154
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 88, 24

Conread position: 40-319
Cow position:
Alignm length: 314
Alignm identity: 232
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 17, 125

Conread position: 40-325
Cow position:
Alignm length: 294
Alignm identity: 204
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 11, 77

Conread position: 52-302
Cow position:
Alignm length: 260
Alignm identity: 178
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 31, 134

Conread position: 61-291
Cow position:
Alignm length: 232
Alignm identity: 166
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 143, 52

Conread position: 61-302
Cow position:
Alignm length: 252
Alignm identity: 171
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 49, 127

Conread position: 66-271
Cow position:
Alignm length: 208
Alignm identity: 145
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 62, 36

Conread position: 66-324
Cow position:
Alignm length: 280
Alignm identity: 202
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 52, 127

Conread position: 70-338
Cow position:
Alignm length: 296
Alignm identity: 205
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 48, 158

Conread position: 111-319
Cow position:
Alignm length: 220
Alignm identity: 170
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 15, 25

Conread position: 111-330
Cow position:
Alignm length: 224
Alignm identity: 156
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 11, 25

Conread position: 135-302
Cow position:
Alignm length: 176
Alignm identity: 140
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 49, 84

Conread position: 135-311
Cow position:
Alignm length: 186
Alignm identity: 145
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 68, 52

Conread position: 135-319
Cow position:
Alignm length: 193
Alignm identity: 145
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 101, 53

Conread position: 135-319
Cow position:
Alignm length: 195
Alignm identity: 154
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 69, 46

Conread position: 135-320
Cow position:
Alignm length: 196
Alignm identity: 151
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 68, 46

Conread position: 135-327
Cow position:
Alignm length: 206
Alignm identity: 161
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 69, 46

Conread position: 135-330
Cow position:
Alignm length: 198
Alignm identity: 150
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 68, 42

Conread position: 135-331
Cow position:
Alignm length: 209
Alignm identity: 156
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 69, 40

Conread position: 135-333
Cow position:
Alignm length: 214
Alignm identity: 163
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 69, 46

Conread position: 135-336
Cow position:
Alignm length: 214
Alignm identity: 156
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 69, 46

Conread position: 135-342
Cow position:
Alignm length: 212
Alignm identity: 152
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 156, 27

Conread position: 136-333
Cow position:
Alignm length: 203
Alignm identity: 150
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 97, 28

Conread position: 136-333
Cow position:
Alignm length: 210
Alignm identity: 150
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 70, 30

Conread position: 138-327
Cow position:
Alignm length: 201
Alignm identity: 162
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 66, 43

Conread position: 139-327
Cow position:
Alignm length: 193
Alignm identity: 145
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 65, 26

Conread position: 139-330
Cow position:
Alignm length: 193
Alignm identity: 139
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 65, 25

Conread position: 139-330
Cow position:
Alignm length: 203
Alignm identity: 149
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 96, 27

Conread position: 140-328
Cow position:
Alignm length: 195
Alignm identity: 141
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 63, 47

Conread position: 140-328
Cow position:
Alignm length: 202
Alignm identity: 145
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 63, 23

Conread position: 140-330
Cow position:
Alignm length: 203
Alignm identity: 147
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 64, 25

Conread position: 140-342
Cow position:
Alignm length: 209
Alignm identity: 152
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 64, 41

Conread position: 140-383
Cow position:
Alignm length: 261
Alignm identity: 189
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 64, 41

Conread position: 141-337
Cow position:
Alignm length: 209
Alignm identity: 152
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 63, 26

Conread position: 144-319
Cow position:
Alignm length: 180
Alignm identity: 130
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 60, 19

Conread position: 145-388
Cow position:
Alignm length: 252
Alignm identity: 176
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 58, 11

Conread position: 185-330
Cow position:
Alignm length: 150
Alignm identity: 114
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 54, 107

Show alignments to all cow chromosomes.