Cow genome map

Conread name: rtra01_e11r1.y1

Conread position: 1-136
Cow position: chr4:37035151-37035285 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 59, 114

Conread position: 1-158
Cow position: chr4:5002846-5002689 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 24, 19

Conread position: 1-191
Cow position: chr4:37881019-37880827 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 142
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 57, 151

Conread position: 1-191
Cow position: chr4:40433818-40434009 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 136
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 59, 120

Conread position: 1-198
Cow position: chr4:23166986-23166792 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 144
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 30, 60

Conread position: 1-199
Cow position: chr4:53752606-53752407 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 144
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 120, 59

Conread position: 1-201
Cow position: chr4:54146383-54146580 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 145
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 99, 46

Conread position: 1-241
Cow position: chr4:50769681-50769942 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 193
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 50, 201

Conread position: 1-255
Cow position: chr4:22235411-22235157 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 178
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 99, 124

Conread position: 1-302
Cow position: chr4:5798050-5797733 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 96

Conread position: 1-308
Cow position: chr4:2121317-2121645 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 234
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 137, 59

Conread position: 1-318
Cow position: chr4:22249365-22249702 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 59

Conread position: 1-319
Cow position: chr4:35471402-35471072 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 235
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 127, 57

Conread position: 1-319
Cow position: chr4:35870290-35869955 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 229

Conread position: 1-325
Cow position: chr4:12697722-12697382 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 252
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 57, 73

Conread position: 1-325
Cow position: chr4:33030634-33030295 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 94

Conread position: 1-327
Cow position: chr4:23495005-23494665 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 76

Conread position: 1-327
Cow position: chr4:61624502-61624858 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 263
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 34, 201

Conread position: 1-328
Cow position: chr4:52226087-52225740 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 243
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 95, 194

Conread position: 1-329
Cow position: chr4:20279412-20279070 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 114

Conread position: 1-330
Cow position: chr4:65406286-65406631 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 12

Conread position: 1-332
Cow position: chr4:45919118-45918758 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 258
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 137, 58

Conread position: 1-343
Cow position: chr4:44665288-44665651 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 257
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 57, 99

Conread position: 1-344
Cow position: chr4:40623017-40623367 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 254
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 138, 58

Conread position: 2-265
Cow position: chr4:31634488-31634766 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 194
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 17, 51

Conread position: 2-310
Cow position: chr4:65841683-65842013 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 232
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 32, 8

Conread position: 2-329
Cow position: chr4:6443004-6443350 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 244
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 129, 51

Conread position: 2-333
Cow position: chr4:13406792-13406435 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 265
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 55, 76

Conread position: 2-342
Cow position: chr4:15283450-15283079 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 253
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 25, 190

Conread position: 3-286
Cow position: chr4:36945112-36945415 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 206
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 96, 0

Conread position: 3-316
Cow position: chr4:36755823-36755493 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 239
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 33, 73

Conread position: 3-329
Cow position: chr4:5623121-5623457 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 233
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 44, 8

Conread position: 4-267
Cow position: chr4:58858087-58858367 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 190
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 28, 235

Conread position: 4-325
Cow position: chr4:62411934-62411608 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 234
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 113, 54

Conread position: 4-383
Cow position: chr4:53554349-53553971 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 21

Conread position: 5-302
Cow position: chr4:37502893-37502581 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 207
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 31, 51

Conread position: 5-319
Cow position: chr4:26373595-26373930 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 239
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 55, 14

Conread position: 5-327
Cow position: chr4:19709020-19708672 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 232
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 29, 222

Conread position: 5-329
Cow position: chr4:56239779-56240115 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 218
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 29, 111

Conread position: 6-189
Cow position: chr4:48283202-48283386 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 134
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 126, 54

Conread position: 6-324
Cow position: chr4:6208541-6208206 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 237
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 23, 214

Conread position: 6-330
Cow position: chr4:25972977-25972628 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 243
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 54, 31

Conread position: 6-330
Cow position: chr4:48499896-48499577 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 45

Conread position: 7-329
Cow position: chr4:45234794-45235130 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 231
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 26, 171

Conread position: 10-302
Cow position: chr4:21073077-21073389 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 224
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 45, 0

Conread position: 10-330
Cow position: chr4:39231446-39231794 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 240
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 24, 11

Conread position: 12-189
Cow position: chr4:33667269-33667096 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 127
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 126, 103

Conread position: 12-294
Cow position: chr4:9548028-9547747 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 198
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 130, 48

Conread position: 15-324
Cow position: chr4:37827783-37828100 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 245
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 45, 20

Conread position: 24-313
Cow position: chr4:27371802-27372110 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 211
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 114, 34

Conread position: 24-331
Cow position: chr4:58856694-58857010 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 223
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 27, 85

Conread position: 27-327
Cow position: chr4:32749257-32748927 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 236
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 20, 172

Conread position: 27-349
Cow position: chr4:16339546-16339884 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 248
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 110, 33

Conread position: 32-317
Cow position: chr4:3133311-3133021 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 203
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 25, 71

Conread position: 48-332
Cow position: chr4:51015125-51014845 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 212
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 10, 93

Conread position: 61-331
Cow position: chr4:4737037-4736767 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 190
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 49, 109

Conread position: 62-328
Cow position: chr4:13878202-13877925 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 189
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 91, 0

Conread position: 65-328
Cow position: chr4:47773621-47773901 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 200
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 73, 0

Conread position: 65-332
Cow position: chr4:2614246-2614513 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 193
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 76, 51

Conread position: 65-338
Cow position: chr4:14470565-14470849 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 193
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 49, 34

Conread position: 113-332
Cow position: chr4:69406324-69406095 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 164
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 13, 56

Conread position: 135-276
Cow position: chr4:39767280-39767132 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 120
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 69, 52

Conread position: 135-301
Cow position: chr4:51408044-51408202 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 131
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 69, 31

Conread position: 135-315
Cow position: chr4:20157488-20157669 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 138
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 69, 32

Conread position: 135-319
Cow position: chr4:68795367-68795565 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 148
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 48, 0

Conread position: 135-323
Cow position: chr4:61271700-61271897 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 150
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 102, 52

Conread position: 135-325
Cow position: chr4:43369923-43370116 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 140
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 69, 32

Conread position: 135-327
Cow position: chr4:24432571-24432379 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 147
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 69, 46

Conread position: 135-327
Cow position: chr4:45114676-45114874 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 152
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 66, 46

Conread position: 135-330
Cow position: chr4:6792367-6792171 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 158
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 68, 46

Conread position: 135-330
Cow position: chr4:10056142-10055940 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 153
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 49, 32

Conread position: 135-330
Cow position: chr4:27997612-27997413 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 144
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 70, 45

Conread position: 135-330
Cow position: chr4:59785247-59785045 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 150
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 69, 32

Conread position: 135-339
Cow position: chr4:12913870-12914080 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 156
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 100, 46

Conread position: 135-349
Cow position: chr4:45240201-45239981 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 161
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 99, 46

Conread position: 136-330
Cow position: chr4:7213654-7213856 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 152
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 94, 35

Conread position: 136-338
Cow position: chr4:28151447-28151248 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 153
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 100, 35

Conread position: 138-319
Cow position: chr4:36813299-36813112 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 148
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 66, 28

Conread position: 138-327
Cow position: chr4:20139591-20139787 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 140
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 24, 70

Conread position: 139-317
Cow position: chr4:38181604-38181423 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 148
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 65, 26

Conread position: 140-329
Cow position: chr4:67408455-67408271 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 138
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 67, 25

Conread position: 140-330
Cow position: chr4:17474363-17474166 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 146
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 64, 24

Conread position: 140-330
Cow position: chr4:19142217-19142018 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 148
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 64, 41

Conread position: 140-330
Cow position: chr4:43865932-43866122 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 147
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 147, 48

Conread position: 140-330
Cow position: chr4:61190588-61190785 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 149
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 64, 41

Conread position: 171-330
Cow position: chr4:40576025-40576187 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 120
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 33, 17

Conread position: 183-330
Cow position: chr4:38309249-38309404 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 119
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 21, 0

Show alignments to all cow chromosomes.