Cow genome map
| Conread name: | rtra01_e11r1.y1 |
| Conread position: | 1-132 |
| Cow position: | chr5:58343976-58343843 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 107 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 1-135 |
| Cow position: | chr5:30333068-30332936 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 1-185 |
| Cow position: | chr5:47680900-47681094 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 1-191 |
| Cow position: | chr5:21534993-21535186 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 31, 112 |
| Conread position: | 1-194 |
| Cow position: | chr5:41604741-41604548 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 137, 59 |
| Conread position: | 1-237 |
| Cow position: | chr5:54090153-54089905 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 57, 107 |
| Conread position: | 1-250 |
| Cow position: | chr5:41945967-41945715 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 186 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 59, 80 |
| Conread position: | 1-260 |
| Cow position: | chr5:73526484-73526213 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 79, 59 |
| Conread position: | 1-302 |
| Cow position: | chr5:39442415-39442086 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 57, 207 |
| Conread position: | 1-308 |
| Cow position: | chr5:27615630-27615298 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 233 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 53, 73 |
| Conread position: | 1-316 |
| Cow position: | chr5:27411283-27411614 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 33, 228 |
| Conread position: | 1-317 |
| Cow position: | chr5:25899756-25900089 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 59, 43 |
| Conread position: | 1-319 |
| Cow position: | chr5:26595014-26595330 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 73, 25 |
| Conread position: | 1-327 |
| Cow position: | chr5:55989858-55989506 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 242 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 129, 59 |
| Conread position: | 1-329 |
| Cow position: | chr5:23646898-23647243 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 230 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 18, 108 |
| Conread position: | 1-330 |
| Cow position: | chr5:26046440-26046096 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 244 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 116, 54 |
| Conread position: | 1-330 |
| Cow position: | chr5:59303163-59303506 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 1-335 |
| Cow position: | chr5:68081855-68082208 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 255 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 53, 30 |
| Conread position: | 1-342 |
| Cow position: | chr5:48573658-48574012 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 250 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 32, 49 |
| Conread position: | 1-350 |
| Cow position: | chr5:48224464-48224837 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 18, 108 |
| Conread position: | 2-160 |
| Cow position: | chr5:34914435-34914597 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 2-314 |
| Cow position: | chr5:54112030-54111696 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 243 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 17, 79 |
| Conread position: | 2-315 |
| Cow position: | chr5:48758057-48757721 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 230 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 35, 268 |
| Conread position: | 2-319 |
| Cow position: | chr5:38805228-38805571 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 247 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 2-320 |
| Cow position: | chr5:39695768-39695428 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 297 |
| Conread position: | 2-327 |
| Cow position: | chr5:25927578-25927927 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 17, 220 |
| Conread position: | 2-327 |
| Cow position: | chr5:41598595-41598934 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 147 |
| Conread position: | 2-329 |
| Cow position: | chr5:28945943-28946296 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 240 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 33, 76 |
| Conread position: | 3-339 |
| Cow position: | chr5:13537248-13536910 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 57, 29 |
| Conread position: | 4-304 |
| Cow position: | chr5:58320356-58320672 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 29, 9 |
| Conread position: | 4-327 |
| Cow position: | chr5:35209362-35209707 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 254 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 56, 29 |
| Conread position: | 4-338 |
| Cow position: | chr5:22934341-22934704 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 265 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 134, 39 |
| Conread position: | 5-314 |
| Cow position: | chr5:50425373-50425700 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 73, 53 |
| Conread position: | 5-330 |
| Cow position: | chr5:6528799-6528442 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 5-330 |
| Cow position: | chr5:14538567-14538887 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 234 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 30, 63 |
| Conread position: | 5-338 |
| Cow position: | chr5:37757725-37758052 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 52, 75 |
| Conread position: | 5-342 |
| Cow position: | chr5:51503117-51502760 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 257 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 128, 54 |
| Conread position: | 6-319 |
| Cow position: | chr5:32696710-32697040 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 224 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 54, 108 |
| Conread position: | 10-191 |
| Cow position: | chr5:36486602-36486422 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 48, 90 |
| Conread position: | 10-327 |
| Cow position: | chr5:23640908-23641222 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 231 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 121, 45 |
| Conread position: | 10-330 |
| Cow position: | chr5:17869797-17869477 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 231 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 128, 50 |
| Conread position: | 12-313 |
| Cow position: | chr5:39049525-39049239 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 15, 45 |
| Conread position: | 14-327 |
| Cow position: | chr5:41334686-41334366 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 26, 10 |
| Conread position: | 25-330 |
| Cow position: | chr5:23666191-23666498 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 40, 84 |
| Conread position: | 25-338 |
| Cow position: | chr5:48535890-48535559 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 37, 59 |
| Conread position: | 32-247 |
| Cow position: | chr5:39181830-39182058 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 82, 28 |
| Conread position: | 44-319 |
| Cow position: | chr5:9972667-9972944 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 126, 10 |
| Conread position: | 87-307 |
| Cow position: | chr5:27492492-27492263 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 39, 24 |
| Conread position: | 118-385 |
| Cow position: | chr5:33348246-33347964 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 134-327 |
| Cow position: | chr5:30332907-30332708 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 85, 70 |
| Conread position: | 135-278 |
| Cow position: | chr5:34167922-34167778 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 69, 46 |
| Conread position: | 135-298 |
| Cow position: | chr5:6896164-6896330 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 96, 39 |
| Conread position: | 135-302 |
| Cow position: | chr5:14513080-14512905 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 69, 46 |
| Conread position: | 135-302 |
| Cow position: | chr5:72891795-72891956 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 69, 42 |
| Conread position: | 135-319 |
| Cow position: | chr5:27690097-27690286 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 69, 36 |
| Conread position: | 135-325 |
| Cow position: | chr5:26562118-26561919 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 69, 31 |
| Conread position: | 135-325 |
| Cow position: | chr5:66831751-66831947 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 68, 46 |
| Conread position: | 135-327 |
| Cow position: | chr5:37713935-37714140 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 69, 46 |
| Conread position: | 135-330 |
| Cow position: | chr5:2500222-2500419 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 56, 32 |
| Conread position: | 135-330 |
| Cow position: | chr5:6987125-6986920 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 69, 42 |
| Conread position: | 135-330 |
| Cow position: | chr5:17028055-17027860 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 70, 45 |
| Conread position: | 135-330 |
| Cow position: | chr5:31913313-31913103 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 46, 105 |
| Conread position: | 135-330 |
| Cow position: | chr5:41604587-41604371 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 135-330 |
| Cow position: | chr5:65924729-65924937 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 50, 135 |
| Conread position: | 135-332 |
| Cow position: | chr5:9234114-9234321 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 67, 54 |
| Conread position: | 135-342 |
| Cow position: | chr5:23180034-23179832 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 69, 5 |
| Conread position: | 136-327 |
| Cow position: | chr5:25225690-25225884 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 97, 45 |
| Conread position: | 136-339 |
| Cow position: | chr5:68715790-68715585 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 68, 41 |
| Conread position: | 137-330 |
| Cow position: | chr5:51076688-51076883 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 67, 44 |
| Conread position: | 138-325 |
| Cow position: | chr5:57126972-57126782 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 98, 43 |
| Conread position: | 138-353 |
| Cow position: | chr5:29505067-29504850 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 66, 28 |
| Conread position: | 140-330 |
| Cow position: | chr5:4218829-4218639 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 97, 18 |
| Conread position: | 140-330 |
| Cow position: | chr5:28224411-28224217 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 64, 23 |
| Conread position: | 140-330 |
| Cow position: | chr5:28330376-28330570 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 63, 28 |
| Conread position: | 140-330 |
| Cow position: | chr5:31469625-31469821 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 64, 24 |
| Conread position: | 140-330 |
| Cow position: | chr5:61600376-61600174 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 64, 28 |
| Conread position: | 140-350 |
| Cow position: | chr5:26377712-26377927 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 64, 27 |
| Conread position: | 140-470 |
| Cow position: | chr5:66281369-66281037 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 119 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 63, 41 |
| Conread position: | 143-302 |
| Cow position: | chr5:66280837-66280999 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 60, 38 |
| Conread position: | 175-309 |
| Cow position: | chr5:29431666-29431807 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 13, 35 |
| Conread position: | 183-330 |
| Cow position: | chr5:12400233-12400081 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 12, 65 |
Show alignments to all cow chromosomes.