Cow genome map

Conread name: rtra01_e11r1.y1

Conread position: 1-137
Cow position: chr6:50317913-50318045 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 104
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 59, 0

Conread position: 1-153
Cow position: chr6:47858418-47858267 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 111
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 132, 59

Conread position: 1-178
Cow position: chr6:13718895-13718715 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 128
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 61, 118

Conread position: 1-184
Cow position: chr6:51840410-51840223 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 136
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 57, 180

Conread position: 1-191
Cow position: chr6:15997086-15997279 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 137
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 136, 57

Conread position: 1-193
Cow position: chr6:7836046-7835854 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 143
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 129, 59

Conread position: 1-193
Cow position: chr6:16733546-16733343 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 150
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 99, 30

Conread position: 1-198
Cow position: chr6:24558010-24557815 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 145
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 137, 50

Conread position: 1-224
Cow position: chr6:59588276-59588501 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 156
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 24, 16

Conread position: 1-236
Cow position: chr6:37612237-37612004 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 180
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 66, 59

Conread position: 1-301
Cow position: chr6:65872019-65871705 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 232
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 137, 112

Conread position: 1-302
Cow position: chr6:2365981-2366301 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 229
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 89, 57

Conread position: 1-302
Cow position: chr6:10237465-10237178 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 211
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 203, 59

Conread position: 1-302
Cow position: chr6:24545745-24545424 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 225
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 61, 0

Conread position: 1-302
Cow position: chr6:54144434-54144108 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 227
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 120, 59

Conread position: 1-309
Cow position: chr6:16219934-16220229 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 226
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 203, 46

Conread position: 1-322
Cow position: chr6:827576-827922 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 243
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 138, 59

Conread position: 1-325
Cow position: chr6:48572748-48573101 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 253
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 33, 221

Conread position: 1-326
Cow position: chr6:1907651-1907319 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 249
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 58, 93

Conread position: 1-326
Cow position: chr6:10254357-10254022 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 232
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 34, 173

Conread position: 1-327
Cow position: chr6:6596703-6596361 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 59

Conread position: 1-327
Cow position: chr6:6994827-6995165 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 230
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 130, 9

Conread position: 1-327
Cow position: chr6:38894981-38895296 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 236
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 302, 59

Conread position: 1-328
Cow position: chr6:24649976-24649626 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 246
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 61, 192

Conread position: 1-329
Cow position: chr6:47326941-47327291 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 248
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 106, 59

Conread position: 1-329
Cow position: chr6:56376217-56376570 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 0

Conread position: 1-330
Cow position: chr6:6943549-6943904 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 47

Conread position: 1-330
Cow position: chr6:28278808-28278466 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 240
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 54, 81

Conread position: 1-330
Cow position: chr6:38018393-38018050 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 249
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 59, 119

Conread position: 1-330
Cow position: chr6:51387881-51387541 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 243
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 33, 115

Conread position: 1-330
Cow position: chr6:57118810-57119152 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 197

Conread position: 1-342
Cow position: chr6:37054116-37053780 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 238
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 115, 52

Conread position: 1-350
Cow position: chr6:36652554-36652179 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 255
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 33, 344

Conread position: 1-355
Cow position: chr6:24223027-24223409 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 59

Conread position: 2-240
Cow position: chr6:50822361-50822112 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 176
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 24, 152

Conread position: 2-302
Cow position: chr6:11159872-11160202 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 227
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 17, 211

Conread position: 2-325
Cow position: chr6:55935846-55936195 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 252
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 17, 201

Conread position: 2-330
Cow position: chr6:63197032-63197395 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 250
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 27, 226

Conread position: 2-331
Cow position: chr6:60930765-60931125 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 244
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 17, 227

Conread position: 2-333
Cow position: chr6:16675940-16675595 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 241
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 32, 219

Conread position: 2-333
Cow position: chr6:57686281-57685932 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 249
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 17, 37

Conread position: 2-338
Cow position: chr6:16626080-16625714 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 249
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 32, 0

Conread position: 3-241
Cow position: chr6:32412510-32412739 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 170
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 136, 32

Conread position: 3-241
Cow position: chr6:53673993-53673736 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 185
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 55, 237

Conread position: 3-302
Cow position: chr6:12652334-12652013 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 228
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 49, 22

Conread position: 3-328
Cow position: chr6:21535169-21534837 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 235
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 31, 119

Conread position: 4-317
Cow position: chr6:50270983-50271305 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 56

Conread position: 4-319
Cow position: chr6:62345755-62346062 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 216
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 237, 51

Conread position: 4-330
Cow position: chr6:2582988-2582651 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 178

Conread position: 5-240
Cow position: chr6:26450440-26450195 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 164
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 30, 0

Conread position: 5-317
Cow position: chr6:23532782-23532452 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 224
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 35, 30

Conread position: 5-338
Cow position: chr6:5302292-5302636 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 232
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 29, 191

Conread position: 6-304
Cow position: chr6:28079787-28080092 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 216
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 28, 181

Conread position: 6-330
Cow position: chr6:52002482-52002145 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 55

Conread position: 6-332
Cow position: chr6:20255284-20255614 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 244
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 52, 137

Conread position: 9-325
Cow position: chr6:35415392-35415740 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 253
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 51, 299

Conread position: 10-302
Cow position: chr6:7989292-7989606 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 212
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 19, 170

Conread position: 10-327
Cow position: chr6:6701151-6701489 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 236
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 9, 108

Conread position: 13-330
Cow position: chr6:11789508-11789178 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 228
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 49, 94

Conread position: 16-325
Cow position: chr6:10484830-10485139 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 212
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 192, 39

Conread position: 23-350
Cow position: chr6:54140907-54140569 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 235
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 11, 93

Conread position: 26-198
Cow position: chr6:59633243-59633067 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 126
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 36, 89

Conread position: 26-330
Cow position: chr6:34549508-34549191 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 221
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 31, 286

Conread position: 31-330
Cow position: chr6:11169802-11169484 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 211
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 17, 84

Conread position: 40-327
Cow position: chr6:58594011-58594330 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 224
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 18, 182

Conread position: 60-295
Cow position: chr6:57680366-57680621 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 185
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 21, 15

Conread position: 61-353
Cow position: chr6:50800346-50800652 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 216
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 68, 126

Conread position: 79-330
Cow position: chr6:23986694-23986958 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 189
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 59, 136

Conread position: 99-327
Cow position: chr6:42840180-42839945 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 169
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 90, 11

Conread position: 111-330
Cow position: chr6:9375366-9375598 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 162
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 85, 57

Conread position: 114-322
Cow position: chr6:11382983-11383181 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 151
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 173, 21

Conread position: 135-288
Cow position: chr6:12964431-12964269 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 129
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 69, 46

Conread position: 135-302
Cow position: chr6:6367693-6367854 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 124
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 153, 52

Conread position: 135-311
Cow position: chr6:15782545-15782730 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 143
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 69, 46

Conread position: 135-316
Cow position: chr6:44377245-44377056 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 148
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 69, 46

Conread position: 135-325
Cow position: chr6:22863432-22863619 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 146
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 108, 44

Conread position: 135-327
Cow position: chr6:20172199-20172000 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 153
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 69, 46

Conread position: 135-327
Cow position: chr6:51191802-51191594 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 160
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 48, 0

Conread position: 135-329
Cow position: chr6:7173776-7173987 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 162
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 69, 46

Conread position: 135-330
Cow position: chr6:30128343-30128549 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 159
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 68, 53

Conread position: 135-330
Cow position: chr6:33851821-33852007 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 150
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 104, 40

Conread position: 135-330
Cow position: chr6:47624986-47625183 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 150
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 69, 46

Conread position: 135-371
Cow position: chr6:58316023-58315787 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 171
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 66, 46

Conread position: 136-330
Cow position: chr6:24781581-24781787 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 152
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 67, 28

Conread position: 139-333
Cow position: chr6:45160322-45160518 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 151
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 65, 28

Conread position: 140-319
Cow position: chr6:55366345-55366536 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 158
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 64, 41

Conread position: 140-327
Cow position: chr6:66433919-66433727 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 143
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 25, 99

Conread position: 140-330
Cow position: chr6:42961390-42961591 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 153
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 64, 7

Conread position: 140-331
Cow position: chr6:48281969-48281770 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 147
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 62, 8

Conread position: 140-338
Cow position: chr6:61515220-61515431 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 155
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 42, 24

Conread position: 142-338
Cow position: chr6:64427162-64426957 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 150
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 57, 46

Conread position: 172-330
Cow position: chr6:12845252-12845093 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 125
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 32, 16

Conread position: 176-333
Cow position: chr6:34204202-34204033 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 9, 0

Show alignments to all cow chromosomes.