Cow genome map
| Conread name: | rtra01_e11r1.y1 |
| Conread position: | 1-139 |
| Cow position: | chr7:37906228-37906363 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 1-153 |
| Cow position: | chr7:40192884-40192728 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 45, 110 |
| Conread position: | 1-153 |
| Cow position: | chr7:67653856-67653701 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 27, 21 |
| Conread position: | 1-158 |
| Cow position: | chr7:51917752-51917911 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 57, 100 |
| Conread position: | 1-178 |
| Cow position: | chr7:39603455-39603271 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 111, 59 |
| Conread position: | 1-184 |
| Cow position: | chr7:22153293-22153110 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 33, 61 |
| Conread position: | 1-240 |
| Cow position: | chr7:24667518-24667270 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 33, 120 |
| Conread position: | 1-247 |
| Cow position: | chr7:47172581-47172835 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 137, 38 |
| Conread position: | 1-264 |
| Cow position: | chr7:12413177-12413449 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 48, 18 |
| Conread position: | 1-301 |
| Cow position: | chr7:64140010-64140315 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 137, 42 |
| Conread position: | 1-302 |
| Cow position: | chr7:23131731-23131406 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 137, 56 |
| Conread position: | 1-311 |
| Cow position: | chr7:47874853-47875172 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 225 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 136, 59 |
| Conread position: | 1-313 |
| Cow position: | chr7:58774018-58773699 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 223 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 49, 116 |
| Conread position: | 1-318 |
| Cow position: | chr7:59246089-59245753 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 1-326 |
| Cow position: | chr7:43215643-43215294 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 246 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 1-330 |
| Cow position: | chr7:25684911-25685259 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 126, 58 |
| Conread position: | 1-330 |
| Cow position: | chr7:62610425-62610084 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 245 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 16, 127 |
| Conread position: | 1-331 |
| Cow position: | chr7:10099228-10099571 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 27, 59 |
| Conread position: | 1-335 |
| Cow position: | chr7:10942730-10943082 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 253 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 99, 53 |
| Conread position: | 1-338 |
| Cow position: | chr7:62102727-62102362 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 262 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 137, 56 |
| Conread position: | 1-340 |
| Cow position: | chr7:25445530-25445169 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 119 |
| Conread position: | 1-342 |
| Cow position: | chr7:48547728-48548094 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 264 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 18, 24 |
| Conread position: | 1-347 |
| Cow position: | chr7:43234311-43234675 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 266 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 56, 196 |
| Conread position: | 2-151 |
| Cow position: | chr7:21545231-21545381 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 53, 117 |
| Conread position: | 2-302 |
| Cow position: | chr7:10896805-10897115 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 226 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 56, 72 |
| Conread position: | 2-330 |
| Cow position: | chr7:25703092-25703440 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 253 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 58, 123 |
| Conread position: | 2-330 |
| Cow position: | chr7:42222304-42222652 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 234 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 23, 182 |
| Conread position: | 2-332 |
| Cow position: | chr7:58841782-58841428 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 54 |
| Conread position: | 2-349 |
| Cow position: | chr7:59031111-59030753 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 247 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 58, 20 |
| Conread position: | 2-352 |
| Cow position: | chr7:23256722-23257100 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 270 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 55, 149 |
| Conread position: | 2-372 |
| Cow position: | chr7:19399544-19399943 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 126 |
| Conread position: | 3-330 |
| Cow position: | chr7:66894407-66894762 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 31, 205 |
| Conread position: | 4-236 |
| Cow position: | chr7:12755025-12755264 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 126, 55 |
| Conread position: | 4-319 |
| Cow position: | chr7:26195674-26195997 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 241 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 54, 84 |
| Conread position: | 5-312 |
| Cow position: | chr7:11872475-11872801 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 115 |
| Conread position: | 5-327 |
| Cow position: | chr7:64003587-64003256 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 235 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 29, 53 |
| Conread position: | 5-329 |
| Cow position: | chr7:13593898-13593556 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 30, 219 |
| Conread position: | 5-330 |
| Cow position: | chr7:37364919-37364576 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 55 |
| Conread position: | 6-302 |
| Cow position: | chr7:19880917-19881222 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 52, 68 |
| Conread position: | 6-342 |
| Cow position: | chr7:44049242-44049597 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 52, 212 |
| Conread position: | 24-324 |
| Cow position: | chr7:56098716-56098398 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 88, 34 |
| Conread position: | 25-319 |
| Cow position: | chr7:48763445-48763146 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 32, 97 |
| Conread position: | 25-325 |
| Cow position: | chr7:68868208-68867892 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 96, 32 |
| Conread position: | 26-280 |
| Cow position: | chr7:56682647-56682909 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 31, 169 |
| Conread position: | 28-330 |
| Cow position: | chr7:17967020-17967340 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 102, 31 |
| Conread position: | 28-330 |
| Cow position: | chr7:28563284-28563604 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 28, 150 |
| Conread position: | 28-338 |
| Cow position: | chr7:45593145-45592810 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 30, 258 |
| Conread position: | 29-330 |
| Cow position: | chr7:18858445-18858119 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 243 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 33, 167 |
| Conread position: | 31-327 |
| Cow position: | chr7:40405948-40405633 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 215 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 26, 172 |
| Conread position: | 44-318 |
| Cow position: | chr7:65953313-65953594 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 78, 63 |
| Conread position: | 60-342 |
| Cow position: | chr7:48815697-48815404 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 215 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 62, 47 |
| Conread position: | 61-332 |
| Cow position: | chr7:34199384-34199101 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 68, 123 |
| Conread position: | 62-330 |
| Cow position: | chr7:27349167-27349446 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 122-347 |
| Cow position: | chr7:42460422-42460195 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 82, 42 |
| Conread position: | 127-330 |
| Cow position: | chr7:51708397-51708610 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 77, 8 |
| Conread position: | 135-286 |
| Cow position: | chr7:61790376-61790529 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 69, 32 |
| Conread position: | 135-319 |
| Cow position: | chr7:16022273-16022091 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 69, 29 |
| Conread position: | 135-319 |
| Cow position: | chr7:43109552-43109742 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 69, 30 |
| Conread position: | 135-327 |
| Cow position: | chr7:21197403-21197600 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 69, 38 |
| Conread position: | 135-327 |
| Cow position: | chr7:40621924-40621717 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 135-330 |
| Cow position: | chr7:13985340-13985536 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 74, 21 |
| Conread position: | 135-330 |
| Cow position: | chr7:18391558-18391353 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 26, 58 |
| Conread position: | 135-330 |
| Cow position: | chr7:47931819-47932017 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 47, 32 |
| Conread position: | 135-333 |
| Cow position: | chr7:40758257-40758471 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 135-333 |
| Cow position: | chr7:59713449-59713240 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 172 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 69, 46 |
| Conread position: | 135-338 |
| Cow position: | chr7:43004353-43004158 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 152, 11 |
| Conread position: | 135-338 |
| Cow position: | chr7:54855544-54855337 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 67, 46 |
| Conread position: | 135-342 |
| Cow position: | chr7:48443788-48443991 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 69, 38 |
| Conread position: | 138-320 |
| Cow position: | chr7:66266612-66266798 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 66, 29 |
| Conread position: | 138-336 |
| Cow position: | chr7:48893139-48893328 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 150, 43 |
| Conread position: | 139-318 |
| Cow position: | chr7:10345450-10345643 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 48, 32 |
| Conread position: | 139-330 |
| Cow position: | chr7:53743924-53744124 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 65, 42 |
| Conread position: | 140-330 |
| Cow position: | chr7:33068322-33068522 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 14, 29 |
| Conread position: | 140-336 |
| Cow position: | chr7:64228920-64229123 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 64, 24 |
| Conread position: | 140-338 |
| Cow position: | chr7:39939714-39939507 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 64, 25 |
| Conread position: | 140-338 |
| Cow position: | chr7:57259054-57259262 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 100, 27 |
| Conread position: | 168-330 |
| Cow position: | chr7:43484613-43484783 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 36, 26 |
| Conread position: | 176-330 |
| Cow position: | chr7:98180-98338 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 33, 28 |
Show alignments to all cow chromosomes.