Cow genome map
| Conread name: | rtra01_e11r1.y1 |
| Conread position: | 1-152 |
| Cow position: | chr8:43693311-43693162 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 136, 57 |
| Conread position: | 1-157 |
| Cow position: | chr8:33218851-33219012 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 1-184 |
| Cow position: | chr8:45987696-45987880 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 57, 95 |
| Conread position: | 1-198 |
| Cow position: | chr8:31814943-31815141 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 137, 160 |
| Conread position: | 1-202 |
| Cow position: | chr8:19171511-19171728 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 57, 115 |
| Conread position: | 1-267 |
| Cow position: | chr8:20682500-20682216 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 21, 201 |
| Conread position: | 1-269 |
| Cow position: | chr8:6469064-6469334 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 195 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 57, 114 |
| Conread position: | 1-283 |
| Cow position: | chr8:50266392-50266093 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 218 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 31, 230 |
| Conread position: | 1-284 |
| Cow position: | chr8:11896306-11896014 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 63, 114 |
| Conread position: | 1-289 |
| Cow position: | chr8:28221464-28221776 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 227 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 128, 59 |
| Conread position: | 1-297 |
| Cow position: | chr8:45486700-45486392 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 229 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 57, 74 |
| Conread position: | 1-319 |
| Cow position: | chr8:13975993-13975656 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 57 |
| Conread position: | 1-325 |
| Cow position: | chr8:46203368-46203038 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 93 |
| Conread position: | 1-327 |
| Cow position: | chr8:48763650-48763313 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 59 |
| Conread position: | 1-328 |
| Cow position: | chr8:11249378-11249710 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 233 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 99, 53 |
| Conread position: | 1-329 |
| Cow position: | chr8:60320620-60320270 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 19 |
| Conread position: | 1-330 |
| Cow position: | chr8:1107086-1107445 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 255 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 1-330 |
| Cow position: | chr8:18220637-18220979 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 248 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 110, 37 |
| Conread position: | 1-330 |
| Cow position: | chr8:50953660-50953312 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 59, 114 |
| Conread position: | 1-330 |
| Cow position: | chr8:55829245-55829591 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 250 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 33, 9 |
| Conread position: | 1-338 |
| Cow position: | chr8:26922726-26922374 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 116 |
| Conread position: | 2-232 |
| Cow position: | chr8:46850260-46850490 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 32, 120 |
| Conread position: | 2-242 |
| Cow position: | chr8:55551113-55550879 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 56, 17 |
| Conread position: | 2-264 |
| Cow position: | chr8:34132831-34133108 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 58, 72 |
| Conread position: | 2-273 |
| Cow position: | chr8:38248603-38248888 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 24, 172 |
| Conread position: | 2-302 |
| Cow position: | chr8:30136017-30135694 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 239 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 96, 54 |
| Conread position: | 2-330 |
| Cow position: | chr8:17077923-17077601 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 113 |
| Conread position: | 2-330 |
| Cow position: | chr8:49599823-49600169 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 231 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 2-332 |
| Cow position: | chr8:12720855-12720517 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 16, 133 |
| Conread position: | 2-338 |
| Cow position: | chr8:42138947-42139305 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 251 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 153, 58 |
| Conread position: | 2-422 |
| Cow position: | chr8:23161051-23160616 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 304 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 55, 353 |
| Conread position: | 3-319 |
| Cow position: | chr8:54070850-54070513 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 251 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 57, 32 |
| Conread position: | 3-330 |
| Cow position: | chr8:48512912-48513260 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 31, 212 |
| Conread position: | 3-332 |
| Cow position: | chr8:43112745-43113071 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 26, 150 |
| Conread position: | 4-194 |
| Cow position: | chr8:10042751-10042559 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 127, 56 |
| Conread position: | 4-198 |
| Cow position: | chr8:36505475-36505281 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 132, 56 |
| Conread position: | 5-310 |
| Cow position: | chr8:11594136-11593839 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 29, 113 |
| Conread position: | 5-324 |
| Cow position: | chr8:44704189-44703843 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 251 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 39, 201 |
| Conread position: | 5-330 |
| Cow position: | chr8:4940221-4940562 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 29, 19 |
| Conread position: | 5-360 |
| Cow position: | chr8:47995223-47995575 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 101, 18 |
| Conread position: | 6-319 |
| Cow position: | chr8:51904940-51905287 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 256 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 6-330 |
| Cow position: | chr8:11591017-11590679 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 129, 54 |
| Conread position: | 6-330 |
| Cow position: | chr8:45244933-45245267 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 230 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 28, 169 |
| Conread position: | 7-327 |
| Cow position: | chr8:24237848-24237507 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 279 |
| Conread position: | 7-328 |
| Cow position: | chr8:13221757-13222093 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 243 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 27, 175 |
| Conread position: | 8-330 |
| Cow position: | chr8:51361655-51361306 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 10-319 |
| Cow position: | chr8:9962502-9962815 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 237 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 50, 104 |
| Conread position: | 10-330 |
| Cow position: | chr8:24934213-24933899 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 234 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 194, 45 |
| Conread position: | 10-338 |
| Cow position: | chr8:13810298-13809948 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 249 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 10-339 |
| Cow position: | chr8:26229050-26228697 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 247 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 24, 112 |
| Conread position: | 17-303 |
| Cow position: | chr8:41951682-41951397 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 225, 42 |
| Conread position: | 27-329 |
| Cow position: | chr8:47549868-47550188 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 31, 147 |
| Conread position: | 31-333 |
| Cow position: | chr8:19442922-19443230 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 67, 7 |
| Conread position: | 45-319 |
| Cow position: | chr8:20673722-20674019 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 46-318 |
| Cow position: | chr8:7599743-7599470 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 52, 14 |
| Conread position: | 59-321 |
| Cow position: | chr8:33287206-33286926 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 69, 193 |
| Conread position: | 59-330 |
| Cow position: | chr8:18395762-18395481 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 85, 250 |
| Conread position: | 73-325 |
| Cow position: | chr8:19429820-19430089 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 86-330 |
| Cow position: | chr8:32719971-32719729 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 36, 82 |
| Conread position: | 135-291 |
| Cow position: | chr8:31690753-31690590 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 63, 46 |
| Conread position: | 135-319 |
| Cow position: | chr8:8134555-8134750 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 69, 46 |
| Conread position: | 135-320 |
| Cow position: | chr8:22653116-22652931 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 70, 40 |
| Conread position: | 135-327 |
| Cow position: | chr8:36505324-36505120 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 40, 177 |
| Conread position: | 135-327 |
| Cow position: | chr8:44664630-44664834 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 69, 46 |
| Conread position: | 135-330 |
| Cow position: | chr8:24471597-24471394 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 87, 32 |
| Conread position: | 135-330 |
| Cow position: | chr8:49265359-49265562 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 69, 46 |
| Conread position: | 135-330 |
| Cow position: | chr8:54572592-54572393 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 69, 32 |
| Conread position: | 135-332 |
| Cow position: | chr8:39936458-39936247 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 50, 65 |
| Conread position: | 135-332 |
| Cow position: | chr8:58520239-58520047 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 38, 54 |
| Conread position: | 135-343 |
| Cow position: | chr8:8481009-8481210 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 69, 31 |
| Conread position: | 135-352 |
| Cow position: | chr8:47483972-47484195 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 176 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 69, 46 |
| Conread position: | 138-330 |
| Cow position: | chr8:16023698-16023889 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 93, 27 |
| Conread position: | 139-296 |
| Cow position: | chr8:37148064-37147903 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 65, 28 |
| Conread position: | 139-323 |
| Cow position: | chr8:8668256-8668444 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 104, 24 |
| Conread position: | 140-329 |
| Cow position: | chr8:10699516-10699709 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 64, 24 |
| Conread position: | 140-330 |
| Cow position: | chr8:20212564-20212760 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 64, 24 |
| Conread position: | 140-338 |
| Cow position: | chr8:47342679-47342471 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 64, 24 |
| Conread position: | 146-338 |
| Cow position: | chr8:37090147-37090343 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 58, 10 |
| Conread position: | 180-330 |
| Cow position: | chr8:16648479-16648636 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 55, 0 |
Show alignments to all cow chromosomes.