Cow genome map

Conread name: rtra01_e11r1.y1

Conread position: 1-131
Cow position: chr9:64007944-64007816 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 99
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 59, 0

Conread position: 1-178
Cow position: chr9:49651665-49651840 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 132
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 137, 21

Conread position: 1-181
Cow position: chr9:15033846-15034024 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 129
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 137, 48

Conread position: 1-191
Cow position: chr9:41957744-41957934 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 140
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 137, 58

Conread position: 1-204
Cow position: chr9:21462928-21462730 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 144
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 175, 59

Conread position: 1-237
Cow position: chr9:49985899-49986134 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 184
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 116, 57

Conread position: 1-250
Cow position: chr9:42037590-42037857 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 188
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 61, 157

Conread position: 1-251
Cow position: chr9:9315243-9315511 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 192
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 24, 120

Conread position: 1-257
Cow position: chr9:25468993-25469248 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 197
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 100, 16

Conread position: 1-261
Cow position: chr9:34204067-34204331 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 186
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 57, 112

Conread position: 1-269
Cow position: chr9:49847144-49847422 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 210
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 57, 142

Conread position: 1-281
Cow position: chr9:15006812-15006511 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 216
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 128, 59

Conread position: 1-301
Cow position: chr9:44552684-44553008 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 120

Conread position: 1-310
Cow position: chr9:8657493-8657164 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 222
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 54, 0

Conread position: 1-319
Cow position: chr9:32266450-32266113 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 232
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 57, 285

Conread position: 1-319
Cow position: chr9:54924557-54924908 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 25

Conread position: 1-323
Cow position: chr9:32624945-32625284 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 248
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 57, 197

Conread position: 1-325
Cow position: chr9:8599544-8599891 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 244
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 33, 84

Conread position: 1-325
Cow position: chr9:54206387-54206044 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 235
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 61, 110

Conread position: 1-325
Cow position: chr9:59924489-59924829 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 245
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 137, 9

Conread position: 1-326
Cow position: chr9:43911867-43912218 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 258
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 59, 20

Conread position: 1-327
Cow position: chr9:5059377-5059077 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 237
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 203, 48

Conread position: 1-327
Cow position: chr9:18093705-18093374 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 221
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 69, 43

Conread position: 1-329
Cow position: chr9:5485805-5486146 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 230
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 18, 137

Conread position: 1-330
Cow position: chr9:14184603-14184968 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 258
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 137, 57

Conread position: 1-330
Cow position: chr9:34309966-34310327 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 258
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 57, 176

Conread position: 1-332
Cow position: chr9:30477838-30477505 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 237
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 28, 195

Conread position: 1-332
Cow position: chr9:35708681-35708327 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 242
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 113, 59

Conread position: 1-333
Cow position: chr9:43037420-43037779 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 263
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 59, 196

Conread position: 1-336
Cow position: chr9:18110927-18110571 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 252
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 137, 30

Conread position: 1-338
Cow position: chr9:3959004-3959354 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 242
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 59, 120

Conread position: 1-342
Cow position: chr9:14960885-14961252 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 256
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 56, 360

Conread position: 1-353
Cow position: chr9:47925861-47926222 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 262
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 35, 107

Conread position: 1-370
Cow position: chr9:214523-214135 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 114

Conread position: 1-389
Cow position: chr9:10667086-10666670 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 286
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 68, 34

Conread position: 2-300
Cow position: chr9:25502593-25502278 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 217
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 17, 186

Conread position: 2-329
Cow position: chr9:25779289-25779628 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 235
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 17, 55

Conread position: 3-301
Cow position: chr9:23042717-23043036 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 223
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 31, 55

Conread position: 3-329
Cow position: chr9:41958847-41958503 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 186

Conread position: 4-189
Cow position: chr9:32817201-32817014 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 134
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 56, 158

Conread position: 4-225
Cow position: chr9:27292338-27292103 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 167
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 54, 86

Conread position: 4-313
Cow position: chr9:19382271-19382598 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 230
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 135, 56

Conread position: 4-325
Cow position: chr9:11201530-11201867 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 234
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 54, 248

Conread position: 4-325
Cow position: chr9:52633550-52633207 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 244
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 110, 54

Conread position: 4-352
Cow position: chr9:39428859-39428495 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 244
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 56, 255

Conread position: 5-330
Cow position: chr9:5327199-5327544 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 242
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 29, 58

Conread position: 6-158
Cow position: chr9:23943221-23943378 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 123
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 12, 0

Conread position: 6-302
Cow position: chr9:2114064-2113742 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 229
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 39, 104

Conread position: 10-272
Cow position: chr9:8617762-8618023 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 194
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 48, 86

Conread position: 10-342
Cow position: chr9:15951213-15950851 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 257
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 35, 355

Conread position: 11-319
Cow position: chr9:5029457-5029797 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 247
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 47, 140

Conread position: 12-308
Cow position: chr9:9200775-9200454 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 241
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 46, 188

Conread position: 12-329
Cow position: chr9:34568764-34568462 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 236
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 48, 25

Conread position: 14-327
Cow position: chr9:30440655-30440322 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 243
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 25, 17

Conread position: 24-330
Cow position: chr9:63597793-63598114 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 231
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 30, 68

Conread position: 35-327
Cow position: chr9:9416423-9416117 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 227
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 23, 143

Conread position: 40-327
Cow position: chr9:38692558-38692248 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 224
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 17, 74

Conread position: 46-329
Cow position: chr9:55364880-55365181 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 209
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 109, 63

Conread position: 58-324
Cow position: chr9:38193006-38193286 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 194
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 53, 63

Conread position: 59-312
Cow position: chr9:20961282-20961013 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 194
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 79, 160

Conread position: 67-327
Cow position: chr9:7390531-7390263 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 180
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 70, 141

Conread position: 94-370
Cow position: chr9:4858592-4858866 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 199
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 90, 39

Conread position: 135-305
Cow position: chr9:29108630-29108802 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 137
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 69, 46

Conread position: 135-310
Cow position: chr9:41317877-41317695 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 139
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 19, 48

Conread position: 135-318
Cow position: chr9:3169428-3169240 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 135
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 106, 0

Conread position: 135-319
Cow position: chr9:10761257-10761068 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 141
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 101, 60

Conread position: 135-319
Cow position: chr9:30189189-30189380 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 153
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 69, 46

Conread position: 135-319
Cow position: chr9:54437358-54437534 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 138
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 69, 31

Conread position: 135-324
Cow position: chr9:50544535-50544346 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 142
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 147, 43

Conread position: 135-327
Cow position: chr9:8950999-8951192 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 156
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 68, 30

Conread position: 135-327
Cow position: chr9:27052245-27052043 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 157
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 68, 42

Conread position: 135-330
Cow position: chr9:33218857-33218659 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 146
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 69, 17

Conread position: 135-330
Cow position: chr9:34762755-34762560 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 153
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 69, 11

Conread position: 135-330
Cow position: chr9:39152586-39152394 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 149
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 69, 40

Conread position: 135-330
Cow position: chr9:64454029-64453830 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 155
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 104, 23

Conread position: 135-335
Cow position: chr9:16745768-16745974 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 164
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 69, 43

Conread position: 135-336
Cow position: chr9:3594438-3594226 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 165
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 69, 23

Conread position: 135-337
Cow position: chr9:5141172-5141375 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 154
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 69, 46

Conread position: 135-480
Cow position: chr9:44108737-44108387 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 148
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 107, 23

Conread position: 136-327
Cow position: chr9:47875861-47875658 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 152
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 63, 0

Conread position: 140-317
Cow position: chr9:18002854-18002669 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 140
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 64, 24

Conread position: 140-330
Cow position: chr9:5227073-5226872 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 148
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 64, 24

Conread position: 140-330
Cow position: chr9:19539187-19539390 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 145
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 64, 0

Conread position: 141-330
Cow position: chr9:35375526-35375714 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 144
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 95, 26

Conread position: 147-339
Cow position: chr9:16300464-16300273 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 142
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 18, 47

Conread position: 148-325
Cow position: chr9:42585520-42585338 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 139
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 56, 19

Show alignments to all cow chromosomes.