Cow genome map

Conread name: rtra01_e11r1.y1

Conread position: 1-153
Cow position: chrX:9839343-9839192 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 111
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 137, 59

Conread position: 1-194
Cow position: chrX:38999967-38999779 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 142
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 137, 52

Conread position: 1-198
Cow position: chrX:7345202-7345007 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 141
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 137, 59

Conread position: 1-205
Cow position: chrX:23179161-23179367 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 142
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 59, 112

Conread position: 1-275
Cow position: chrX:16514148-16514443 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 215
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 137, 59

Conread position: 1-298
Cow position: chrX:8917961-8917651 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 229
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 112, 59

Conread position: 1-300
Cow position: chrX:18216386-18216072 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 235
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 24, 60

Conread position: 1-317
Cow position: chrX:36009794-36010114 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 233
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 57, 113

Conread position: 1-318
Cow position: chrX:9041125-9041454 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 223
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 33, 194

Conread position: 1-319
Cow position: chrX:11746949-11746616 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 245
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 46, 23

Conread position: 1-319
Cow position: chrX:21664602-21664949 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 246
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 57, 72

Conread position: 1-321
Cow position: chrX:2301043-2300708 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 96

Conread position: 1-324
Cow position: chrX:15329761-15329422 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 0

Conread position: 1-325
Cow position: chrX:27176194-27176552 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 252
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 59, 0

Conread position: 1-327
Cow position: chrX:905452-905122 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 228
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 56, 114

Conread position: 1-327
Cow position: chrX:6203660-6203321 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 240
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 32, 105

Conread position: 1-327
Cow position: chrX:6563638-6563278 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 261
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 137, 58

Conread position: 1-327
Cow position: chrX:24132032-24132385 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 254
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 61, 201

Conread position: 1-327
Cow position: chrX:27287618-27287953 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 249
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 137, 59

Conread position: 1-330
Cow position: chrX:2786438-2786781 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 250
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 54, 102

Conread position: 1-330
Cow position: chrX:5046798-5047134 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 229
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 74, 59

Conread position: 1-330
Cow position: chrX:19879157-19878831 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 246
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 106, 59

Conread position: 1-330
Cow position: chrX:25338306-25337942 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 198

Conread position: 1-330
Cow position: chrX:28111628-28111269 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 211

Conread position: 1-330
Cow position: chrX:30163124-30162760 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 263
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 60, 210

Conread position: 1-332
Cow position: chrX:11313666-11314017 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 256
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 59, 33

Conread position: 1-333
Cow position: chrX:36840982-36840633 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 258
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 36, 60

Conread position: 1-343
Cow position: chrX:18286958-18287301 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 152

Conread position: 2-158
Cow position: chrX:29407904-29408065 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 117
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 33, 0

Conread position: 2-327
Cow position: chrX:40692633-40692972 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 251
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 32, 196

Conread position: 2-330
Cow position: chrX:25849023-25848682 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 245
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 31, 76

Conread position: 2-338
Cow position: chrX:25713913-25713554 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 300

Conread position: 3-318
Cow position: chrX:6041092-6041420 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 216
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 30, 0

Conread position: 3-333
Cow position: chrX:41084032-41083685 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 252
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 29, 181

Conread position: 3-339
Cow position: chrX:20801886-20801534 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 253
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 17, 176

Conread position: 4-327
Cow position: chrX:39126442-39126104 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 234
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 25, 203

Conread position: 5-315
Cow position: chrX:1503442-1503117 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 221
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 29, 0

Conread position: 5-317
Cow position: chrX:17042797-17042466 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 239
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 53, 187

Conread position: 5-328
Cow position: chrX:28134453-28134111 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 231
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 52, 44

Conread position: 5-330
Cow position: chrX:38226995-38227327 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 219
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 29, 8

Conread position: 5-330
Cow position: chrX:42492408-42492747 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 235
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 29, 174

Conread position: 5-332
Cow position: chrX:17662483-17662836 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 245
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 32, 55

Conread position: 5-368
Cow position: chrX:5872432-5872035 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 262
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 28, 177

Conread position: 6-330
Cow position: chrX:6690146-6690485 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 241
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 28, 197

Conread position: 6-330
Cow position: chrX:7695863-7695524 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 236
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 23, 247

Conread position: 7-333
Cow position: chrX:3154130-3154486 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 196

Conread position: 10-158
Cow position: chrX:19678162-19678306 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 128, 50

Conread position: 10-302
Cow position: chrX:41560156-41560445 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 217
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 128, 51

Conread position: 10-323
Cow position: chrX:7497352-7497015 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 233
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 48, 0

Conread position: 10-328
Cow position: chrX:12309276-12309624 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 236
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 24, 176

Conread position: 10-338
Cow position: chrX:39545869-39546220 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 258
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 26, 50

Conread position: 11-330
Cow position: chrX:3160925-3161253 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 44

Conread position: 17-294
Cow position: chrX:16933551-16933272 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 193
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 43, 73

Conread position: 19-329
Cow position: chrX:8517975-8517640 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 245
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 30, 64

Conread position: 24-330
Cow position: chrX:8558368-8558700 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 224
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 72, 0

Conread position: 25-254
Cow position: chrX:36559458-36559211 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 181
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 37, 177

Conread position: 25-318
Cow position: chrX:35926051-35925742 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 218
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 35, 194

Conread position: 26-289
Cow position: chrX:2764955-2764676 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 206
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 32, 0

Conread position: 26-327
Cow position: chrX:23414275-23414602 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 229
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 32, 0

Conread position: 28-330
Cow position: chrX:21227551-21227235 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 212
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 28, 115

Conread position: 28-330
Cow position: chrX:30179844-30180163 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 219
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 23, 91

Conread position: 31-330
Cow position: chrX:19290850-19290535 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 213
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 26, 80

Conread position: 32-338
Cow position: chrX:17542047-17541717 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 239
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 30, 88

Conread position: 35-330
Cow position: chrX:18294002-18293695 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 214
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 118, 23

Conread position: 40-319
Cow position: chrX:48227546-48227839 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 209
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 18, 55

Conread position: 44-329
Cow position: chrX:5638109-5638405 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 204
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 11, 124

Conread position: 52-330
Cow position: chrX:19188995-19188699 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 215
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 62, 7

Conread position: 60-338
Cow position: chrX:37956413-37956121 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 204
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 50, 17

Conread position: 78-330
Cow position: chrX:11581972-11581697 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 191
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 57, 93

Conread position: 107-333
Cow position: chrX:32127989-32128220 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 165
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 28, 36

Conread position: 135-298
Cow position: chrX:31340672-31340502 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 140
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 69, 46

Conread position: 135-303
Cow position: chrX:2147308-2147127 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 136
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 50, 0

Conread position: 135-313
Cow position: chrX:281087-280914 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 145
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 69, 46

Conread position: 135-318
Cow position: chrX:11455084-11455277 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 140
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 30, 0

Conread position: 135-327
Cow position: chrX:21816226-21816025 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 141
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 85, 53

Conread position: 135-327
Cow position: chrX:29032373-29032183 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 148
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 69, 46

Conread position: 135-329
Cow position: chrX:35409621-35409432 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 145
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 69, 32

Conread position: 135-330
Cow position: chrX:9635222-9635418 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 147
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 69, 29

Conread position: 135-330
Cow position: chrX:38094558-38094762 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 156
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 69, 32

Conread position: 135-338
Cow position: chrX:488455-488243 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 162
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 69, 40

Conread position: 135-338
Cow position: chrX:43647784-43647991 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 156
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 69, 46

Conread position: 135-342
Cow position: chrX:38840852-38840637 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 168
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 98, 50

Conread position: 135-385
Cow position: chrX:38964068-38963816 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 179
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 104, 46

Conread position: 136-265
Cow position: chrX:23667086-23666954 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 112
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 67, 51

Conread position: 136-276
Cow position: chrX:12094442-12094590 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 68, 30

Conread position: 136-329
Cow position: chrX:24201149-24200957 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 157
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 68, 45

Conread position: 136-330
Cow position: chrX:24259621-24259815 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 151
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 68, 34

Conread position: 138-300
Cow position: chrX:28835945-28836105 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 122
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 98, 32

Conread position: 138-330
Cow position: chrX:1810198-1810398 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 145
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 57, 123

Conread position: 138-335
Cow position: chrX:157814-158013 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 153
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 66, 43

Conread position: 139-324
Cow position: chrX:18456360-18456161 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 150
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 10, 0

Conread position: 139-339
Cow position: chrX:47744048-47743829 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 163
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 38, 19

Conread position: 140-321
Cow position: chrX:29509483-29509672 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 142
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 64, 24

Conread position: 141-333
Cow position: chrX:38439435-38439233 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 150
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 63, 26

Conread position: 141-338
Cow position: chrX:20151807-20151603 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 155
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 43, 34

Conread position: 189-376
Cow position: chrX:27322955-27323146 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 141
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 15, 163

Show alignments to all cow chromosomes.