Cow genome map
| Conread name: | rtra01_i24r1.y1 |
| Conread position: | 1-135 |
| Cow position: | chr10:42690051-42689911 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-140 |
| Cow position: | chr10:22618405-22618266 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-140 |
| Cow position: | chr10:44723684-44723539 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-140 |
| Cow position: | chr10:50331828-50331684 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 1-201 |
| Cow position: | chr10:20102148-20101954 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 55, 148 |
| Conread position: | 1-219 |
| Cow position: | chr10:39813568-39813358 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 56, 96 |
| Conread position: | 1-219 |
| Cow position: | chr10:40149339-40149134 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 57, 13 |
| Conread position: | 1-220 |
| Cow position: | chr10:38940942-38941152 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 65, 91 |
| Conread position: | 1-226 |
| Cow position: | chr10:14806756-14806975 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 56, 146 |
| Conread position: | 1-226 |
| Cow position: | chr10:14970730-14970948 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 55, 147 |
| Conread position: | 1-226 |
| Cow position: | chr10:15620566-15620347 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 57, 149 |
| Conread position: | 1-226 |
| Cow position: | chr10:19842491-19842710 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 56, 146 |
| Conread position: | 1-226 |
| Cow position: | chr10:22380538-22380756 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 56, 147 |
| Conread position: | 1-226 |
| Cow position: | chr10:32086509-32086727 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 56, 147 |
| Conread position: | 1-226 |
| Cow position: | chr10:32581059-32581277 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 55, 147 |
| Conread position: | 1-226 |
| Cow position: | chr10:33868363-33868145 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 65, 147 |
| Conread position: | 1-226 |
| Cow position: | chr10:35824523-35824304 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 176 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 56, 148 |
| Conread position: | 1-226 |
| Cow position: | chr10:37126393-37126178 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 56, 110 |
| Conread position: | 1-226 |
| Cow position: | chr10:40140433-40140203 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 51, 117 |
| Conread position: | 1-226 |
| Cow position: | chr10:41569926-41570143 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 58, 146 |
| Conread position: | 1-226 |
| Cow position: | chr10:49430463-49430683 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 33, 144 |
| Conread position: | 1-313 |
| Cow position: | chr10:42635554-42635867 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 56, 139 |
| Conread position: | 1-334 |
| Cow position: | chr10:32830462-32830818 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 1-353 |
| Cow position: | chr10:42744417-42744772 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 145 |
| Conread position: | 1-357 |
| Cow position: | chr10:3817093-3817464 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 1-358 |
| Cow position: | chr10:32008898-32009270 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 226 |
| Conread position: | 1-361 |
| Cow position: | chr10:15489649-15490019 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 89 |
| Conread position: | 1-361 |
| Cow position: | chr10:39849402-39849026 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 315 |
| Conread position: | 1-361 |
| Cow position: | chr10:45647678-45648054 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 96 |
| Conread position: | 1-361 |
| Cow position: | chr10:46171235-46171609 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 1-362 |
| Cow position: | chr10:30688820-30689196 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 147 |
| Conread position: | 1-362 |
| Cow position: | chr10:55099103-55098746 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 263 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 89, 6 |
| Conread position: | 1-363 |
| Cow position: | chr10:2117621-2117243 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 211 |
| Conread position: | 1-363 |
| Cow position: | chr10:6221067-6221444 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 35 |
| Conread position: | 1-363 |
| Cow position: | chr10:7279281-7278902 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 1-363 |
| Cow position: | chr10:8292951-8293328 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 211 |
| Conread position: | 1-363 |
| Cow position: | chr10:8681445-8681823 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 1-363 |
| Cow position: | chr10:17222192-17222571 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 157 |
| Conread position: | 1-363 |
| Cow position: | chr10:18106387-18106763 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 156 |
| Conread position: | 1-363 |
| Cow position: | chr10:21729882-21729504 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 1-363 |
| Cow position: | chr10:22645851-22646199 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 261 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 56, 134 |
| Conread position: | 1-363 |
| Cow position: | chr10:23848787-23849165 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 1-363 |
| Cow position: | chr10:25633016-25632640 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 1-363 |
| Cow position: | chr10:26292665-26292290 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 96 |
| Conread position: | 1-363 |
| Cow position: | chr10:30682668-30682295 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 156 |
| Conread position: | 1-363 |
| Cow position: | chr10:30719514-30719894 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 158 |
| Conread position: | 1-363 |
| Cow position: | chr10:31022233-31021856 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 91 |
| Conread position: | 1-363 |
| Cow position: | chr10:32699486-32699863 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 211 |
| Conread position: | 1-363 |
| Cow position: | chr10:34335676-34335298 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 1-363 |
| Cow position: | chr10:36275355-36274977 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 1-363 |
| Cow position: | chr10:46173370-46172992 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 148 |
| Conread position: | 1-363 |
| Cow position: | chr10:51558221-51558599 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 156 |
| Conread position: | 1-363 |
| Cow position: | chr10:55973818-55974196 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 156 |
| Conread position: | 1-363 |
| Cow position: | chr10:57554514-57554136 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 156 |
| Conread position: | 1-363 |
| Cow position: | chr10:60205949-60206332 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 261 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 1-363 |
| Cow position: | chr10:66773575-66773196 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 157 |
| Conread position: | 2-140 |
| Cow position: | chr10:54929140-54928990 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 2-226 |
| Cow position: | chr10:27004758-27004541 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 55, 146 |
| Conread position: | 3-149 |
| Cow position: | chr10:37429273-37429423 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 54, 13 |
| Conread position: | 3-361 |
| Cow position: | chr10:50017540-50017168 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 142 |
| Conread position: | 3-363 |
| Cow position: | chr10:21398397-21398022 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 94 |
| Conread position: | 7-363 |
| Cow position: | chr10:34664941-34664570 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 204 |
| Conread position: | 18-219 |
| Cow position: | chr10:52738695-52738889 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 39, 130 |
| Conread position: | 20-363 |
| Cow position: | chr10:38817747-38818106 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 137 |
| Conread position: | 22-361 |
| Cow position: | chr10:2467048-2466697 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 253 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 35, 159 |
| Conread position: | 51-363 |
| Cow position: | chr10:19491898-19491578 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 100 |
| Conread position: | 69-363 |
| Cow position: | chr10:38542824-38542523 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 111, 68 |
| Conread position: | 92-363 |
| Cow position: | chr10:36879538-36879257 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 83, 59 |
| Conread position: | 162-363 |
| Cow position: | chr10:45670905-45670701 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 68, 103 |
| Conread position: | 165-361 |
| Cow position: | chr10:47772411-47772619 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 70, 150 |
| Conread position: | 175-362 |
| Cow position: | chr10:28948486-28948675 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 41, 89 |
Show alignments to all cow chromosomes.