Cow genome map

Conread name: rtra01_i24r1.y1

Conread position: 1-136
Cow position: chr12:24993224-24993083 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 55, 0

Conread position: 1-140
Cow position: chr12:22571586-22571731 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 115
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 56, 0

Conread position: 1-218
Cow position: chr12:31424052-31423842 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 165
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 55, 147

Conread position: 1-219
Cow position: chr12:15539541-15539752 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 167
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 55, 147

Conread position: 1-219
Cow position: chr12:21610335-21610547 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 168
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 56, 143

Conread position: 1-226
Cow position: chr12:14569072-14568854 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 169
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 55, 143

Conread position: 1-226
Cow position: chr12:22518169-22517951 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 174
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 55, 147

Conread position: 1-226
Cow position: chr12:24980464-24980682 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 171
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 67, 145

Conread position: 1-226
Cow position: chr12:25266590-25266372 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 179
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 56, 147

Conread position: 1-226
Cow position: chr12:28764259-28764038 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 177
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 56, 150

Conread position: 1-226
Cow position: chr12:34964555-34964338 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 166
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 65, 107

Conread position: 1-226
Cow position: chr12:35548383-35548166 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 177
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 66, 146

Conread position: 1-226
Cow position: chr12:36212999-36213217 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 172
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 56, 147

Conread position: 1-226
Cow position: chr12:38893105-38893323 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 174
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 56, 147

Conread position: 1-308
Cow position: chr12:21057952-21057629 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 215
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 52, 237

Conread position: 1-318
Cow position: chr12:36405925-36405592 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 233
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 55, 156

Conread position: 1-345
Cow position: chr12:21392281-21391920 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 248
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 59, 156

Conread position: 1-360
Cow position: chr12:3363685-3364061 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 157

Conread position: 1-361
Cow position: chr12:19156111-19155741 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 266
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 56, 159

Conread position: 1-361
Cow position: chr12:32656298-32656667 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 258
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 56, 96

Conread position: 1-363
Cow position: chr12:536826-536448 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 156

Conread position: 1-363
Cow position: chr12:1437671-1438030 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 255
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 55, 147

Conread position: 1-363
Cow position: chr12:1775172-1774798 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 131

Conread position: 1-363
Cow position: chr12:6106605-6106228 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 157

Conread position: 1-363
Cow position: chr12:20995014-20994644 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 99

Conread position: 1-363
Cow position: chr12:21664879-21665256 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 156

Conread position: 1-363
Cow position: chr12:21719429-21719056 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 210

Conread position: 1-363
Cow position: chr12:24993080-24992702 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 156

Conread position: 1-363
Cow position: chr12:25143958-25143605 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 253
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 100, 35

Conread position: 1-363
Cow position: chr12:27958783-27958405 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 156

Conread position: 1-363
Cow position: chr12:35312148-35311791 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 260
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 56, 100

Conread position: 1-363
Cow position: chr12:46163482-46163860 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 156

Conread position: 3-362
Cow position: chr12:21904117-21904486 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 262
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 54, 202

Conread position: 3-363
Cow position: chr12:39929913-39930289 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 154

Conread position: 4-140
Cow position: chr12:27479525-27479666 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 111
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 53, 39

Conread position: 5-315
Cow position: chr12:21211495-21211821 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 226
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 52, 152

Conread position: 10-363
Cow position: chr12:24696298-24696666 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 147

Conread position: 54-226
Cow position: chr12:1107834-1108003 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 125
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 92, 26

Conread position: 59-363
Cow position: chr12:25148813-25148497 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 221
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 12, 94

Conread position: 96-363
Cow position: chr12:32757541-32757817 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 195
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 79, 8

Show alignments to all cow chromosomes.