Cow genome map

Conread name: rtra01_i24r1.y1

Conread position: 1-149
Cow position: chr16:1958580-1958426 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 121
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 66, 0

Conread position: 1-213
Cow position: chr16:5762852-5763072 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 156
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 65, 99

Conread position: 1-214
Cow position: chr16:56861370-56861576 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 163
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 55, 147

Conread position: 1-219
Cow position: chr16:34505759-34505971 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 176
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 50, 146

Conread position: 1-219
Cow position: chr16:46520988-46520773 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 171
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 59, 151

Conread position: 1-226
Cow position: chr16:839344-839562 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 177
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 56, 147

Conread position: 1-226
Cow position: chr16:3819425-3819643 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 174
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 57, 105

Conread position: 1-226
Cow position: chr16:4756084-4756303 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 175
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 67, 146

Conread position: 1-226
Cow position: chr16:6733807-6733589 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 171
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 55, 147

Conread position: 1-226
Cow position: chr16:16150688-16150469 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 174
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 56, 148

Conread position: 1-226
Cow position: chr16:23098401-23098619 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 180
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 56, 147

Conread position: 1-226
Cow position: chr16:29049492-29049710 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 176
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 56, 149

Conread position: 1-226
Cow position: chr16:29207161-29206950 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 168
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 51, 99

Conread position: 1-226
Cow position: chr16:41161409-41161180 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 180
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 56, 160

Conread position: 1-226
Cow position: chr16:46102556-46102338 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 175
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 56, 149

Conread position: 1-226
Cow position: chr16:49463518-49463300 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 169
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 55, 147

Conread position: 1-345
Cow position: chr16:53991024-53991380 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 154

Conread position: 1-350
Cow position: chr16:44675529-44675872 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 240
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 70, 97

Conread position: 1-359
Cow position: chr16:27711117-27710765 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 46

Conread position: 1-362
Cow position: chr16:42074828-42074461 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 46

Conread position: 1-363
Cow position: chr16:34560-34938 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 142

Conread position: 1-363
Cow position: chr16:5526045-5525666 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 212

Conread position: 1-363
Cow position: chr16:11744601-11744979 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 156

Conread position: 1-363
Cow position: chr16:12650990-12651366 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 154

Conread position: 1-363
Cow position: chr16:13539364-13538986 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 156

Conread position: 1-363
Cow position: chr16:15311343-15311721 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 156

Conread position: 1-363
Cow position: chr16:15812129-15812506 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 112

Conread position: 1-363
Cow position: chr16:17111312-17111690 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 156

Conread position: 1-363
Cow position: chr16:18974926-18975306 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 151

Conread position: 1-363
Cow position: chr16:21017620-21017997 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 107

Conread position: 1-363
Cow position: chr16:21189318-21189696 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 156

Conread position: 1-363
Cow position: chr16:23876469-23876092 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 156

Conread position: 1-363
Cow position: chr16:24621637-24621259 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 156

Conread position: 1-363
Cow position: chr16:25260185-25260562 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 156

Conread position: 1-363
Cow position: chr16:28168257-28167880 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 155

Conread position: 1-363
Cow position: chr16:29035954-29036315 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 143

Conread position: 1-363
Cow position: chr16:34532355-34532732 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 210

Conread position: 1-363
Cow position: chr16:37146037-37146415 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 156

Conread position: 1-363
Cow position: chr16:37478800-37478422 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 211

Conread position: 1-363
Cow position: chr16:41515195-41515570 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 63

Conread position: 1-363
Cow position: chr16:45704731-45704355 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 164

Conread position: 1-363
Cow position: chr16:54431634-54432012 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 156

Conread position: 1-363
Cow position: chr16:55591915-55591542 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 201

Conread position: 2-226
Cow position: chr16:26389108-26388887 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 174
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 51, 150

Conread position: 2-333
Cow position: chr16:20377523-20377870 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 210

Conread position: 2-363
Cow position: chr16:29157711-29158060 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 259
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 55, 155

Conread position: 3-226
Cow position: chr16:23097102-23096886 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 178
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 54, 145

Conread position: 3-363
Cow position: chr16:39615302-39615662 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 257
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 62, 119

Conread position: 3-363
Cow position: chr16:49219892-49219511 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 258
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 54, 144

Conread position: 6-140
Cow position: chr16:49171022-49170883 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 108
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 51, 135

Conread position: 53-363
Cow position: chr16:28066176-28066495 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 228
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 122, 12

Conread position: 65-363
Cow position: chr16:4973392-4973087 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 213
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 110, 86

Conread position: 69-363
Cow position: chr16:24988583-24988279 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 220
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 106, 82

Conread position: 105-363
Cow position: chr16:26316881-26317149 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 191
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 70, 46

Show alignments to all cow chromosomes.