Cow genome map
| Conread name: | rtra01_i24r1.y1 |
| Conread position: | 1-125 |
| Cow position: | chr19:51287553-51287423 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 106 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 1-203 |
| Cow position: | chr19:100849-100654 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 65, 151 |
| Conread position: | 1-214 |
| Cow position: | chr19:6440043-6440249 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 56, 147 |
| Conread position: | 1-214 |
| Cow position: | chr19:22512093-22512300 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 56, 148 |
| Conread position: | 1-215 |
| Cow position: | chr19:39340344-39340136 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 56, 157 |
| Conread position: | 1-219 |
| Cow position: | chr19:39696113-39696328 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 57, 145 |
| Conread position: | 1-219 |
| Cow position: | chr19:55842843-55843060 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 22, 153 |
| Conread position: | 1-225 |
| Cow position: | chr19:542770-542554 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 65, 142 |
| Conread position: | 1-225 |
| Cow position: | chr19:799091-799312 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 57, 144 |
| Conread position: | 1-226 |
| Cow position: | chr19:436487-436268 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 56, 142 |
| Conread position: | 1-226 |
| Cow position: | chr19:474647-474429 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 55, 147 |
| Conread position: | 1-226 |
| Cow position: | chr19:776365-776581 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 67, 98 |
| Conread position: | 1-226 |
| Cow position: | chr19:16317760-16317542 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 55, 145 |
| Conread position: | 1-226 |
| Cow position: | chr19:20107587-20107805 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 56, 147 |
| Conread position: | 1-226 |
| Cow position: | chr19:40016737-40016519 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 56, 142 |
| Conread position: | 1-301 |
| Cow position: | chr19:15445014-15444698 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 229 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 56, 156 |
| Conread position: | 1-324 |
| Cow position: | chr19:52148699-52148362 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 240 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 56, 158 |
| Conread position: | 1-362 |
| Cow position: | chr19:731142-730765 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 157 |
| Conread position: | 1-363 |
| Cow position: | chr19:175318-175695 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 210 |
| Conread position: | 1-363 |
| Cow position: | chr19:207350-207727 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 226 |
| Conread position: | 1-363 |
| Cow position: | chr19:10194491-10194864 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 1-363 |
| Cow position: | chr19:16479016-16478639 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 166 |
| Conread position: | 1-363 |
| Cow position: | chr19:19388683-19389061 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 1-363 |
| Cow position: | chr19:20611183-20611561 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 156 |
| Conread position: | 1-363 |
| Cow position: | chr19:21337982-21337605 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 210 |
| Conread position: | 1-363 |
| Cow position: | chr19:33527696-33528074 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 1-363 |
| Cow position: | chr19:43148431-43148808 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 261 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 56, 156 |
| Conread position: | 1-363 |
| Cow position: | chr19:55164805-55164430 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 157 |
| Conread position: | 2-136 |
| Cow position: | chr19:28403718-28403578 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 2-362 |
| Cow position: | chr19:28596227-28596602 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 262 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 55, 208 |
| Conread position: | 2-363 |
| Cow position: | chr19:7481085-7480707 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 155 |
| Conread position: | 2-363 |
| Cow position: | chr19:7490950-7491324 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 210 |
| Conread position: | 3-226 |
| Cow position: | chr19:159002-158785 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 55, 100 |
| Conread position: | 8-363 |
| Cow position: | chr19:55377751-55378122 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 149 |
| Conread position: | 50-363 |
| Cow position: | chr19:37844870-37844552 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 226 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 130, 15 |
| Conread position: | 162-346 |
| Cow position: | chr19:4073-4268 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 57, 0 |
Show alignments to all cow chromosomes.