Cow genome map
| Conread name: | rtra01_i24r1.y1 |
| Conread position: | 1-211 |
| Cow position: | chr20:9338838-9339037 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 51, 141 |
| Conread position: | 1-217 |
| Cow position: | chr20:24568457-24568248 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 64, 147 |
| Conread position: | 1-219 |
| Cow position: | chr20:825592-825803 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 56, 145 |
| Conread position: | 1-225 |
| Cow position: | chr20:37169415-37169197 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 63, 148 |
| Conread position: | 1-226 |
| Cow position: | chr20:14721555-14721345 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-226 |
| Cow position: | chr20:16559729-16559511 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 55, 147 |
| Conread position: | 1-226 |
| Cow position: | chr20:18356043-18356261 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 55, 147 |
| Conread position: | 1-226 |
| Cow position: | chr20:23466837-23466620 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 56, 148 |
| Conread position: | 1-226 |
| Cow position: | chr20:24542238-24542456 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 64, 147 |
| Conread position: | 1-226 |
| Cow position: | chr20:34459500-34459282 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 56, 145 |
| Conread position: | 1-226 |
| Cow position: | chr20:39234043-39234261 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 55, 147 |
| Conread position: | 1-337 |
| Cow position: | chr20:16944331-16944675 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 242 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 55, 179 |
| Conread position: | 1-349 |
| Cow position: | chr20:16515171-16515513 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 240 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 56, 16 |
| Conread position: | 1-362 |
| Cow position: | chr20:25845812-25845434 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 160 |
| Conread position: | 1-362 |
| Cow position: | chr20:30385434-30385056 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-363 |
| Cow position: | chr20:753250-753630 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 156 |
| Conread position: | 1-363 |
| Cow position: | chr20:3808957-3808583 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 1-363 |
| Cow position: | chr20:8971079-8970703 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 187 |
| Conread position: | 1-363 |
| Cow position: | chr20:14757445-14757080 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 107 |
| Conread position: | 1-363 |
| Cow position: | chr20:14925830-14925452 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 1-363 |
| Cow position: | chr20:16189929-16189551 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 1-363 |
| Cow position: | chr20:19306573-19306195 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 1-363 |
| Cow position: | chr20:20440139-20439780 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 254 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 174, 67 |
| Conread position: | 1-363 |
| Cow position: | chr20:21016195-21015821 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 66 |
| Conread position: | 1-363 |
| Cow position: | chr20:23801715-23802081 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 150 |
| Conread position: | 1-363 |
| Cow position: | chr20:33598152-33597774 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 1-363 |
| Cow position: | chr20:35108375-35107997 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 1-363 |
| Cow position: | chr20:35131822-35132198 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 259 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 56, 134 |
| Conread position: | 1-363 |
| Cow position: | chr20:35159768-35159392 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 210 |
| Conread position: | 1-363 |
| Cow position: | chr20:38956950-38957328 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 1-363 |
| Cow position: | chr20:42085345-42085723 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 2-226 |
| Cow position: | chr20:13506745-13506528 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 66, 146 |
| Conread position: | 2-362 |
| Cow position: | chr20:13788923-13789297 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 262 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 54, 103 |
| Conread position: | 3-226 |
| Cow position: | chr20:7598043-7597827 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 54, 145 |
| Conread position: | 5-346 |
| Cow position: | chr20:6476334-6476692 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 96 |
| Conread position: | 7-363 |
| Cow position: | chr20:15294856-15295210 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 94 |
| Conread position: | 9-363 |
| Cow position: | chr20:5086517-5086147 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 148 |
| Conread position: | 12-256 |
| Cow position: | chr20:29758090-29758341 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 44, 145 |
| Conread position: | 32-363 |
| Cow position: | chr20:31220153-31220488 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 253 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 25, 119 |
| Conread position: | 50-363 |
| Cow position: | chr20:23393145-23392822 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 101 |
| Conread position: | 52-363 |
| Cow position: | chr20:33181617-33181308 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 31, 95 |
| Conread position: | 86-363 |
| Cow position: | chr20:40007752-40007465 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 89, 65 |
| Conread position: | 168-363 |
| Cow position: | chr20:30737259-30737464 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 60, 0 |
Show alignments to all cow chromosomes.