Cow genome map
| Conread name: | rtra01_i24r1.y1 |
| Conread position: | 1-140 |
| Cow position: | chr22:32812809-32812664 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 1-219 |
| Cow position: | chr22:5625017-5624806 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 56, 149 |
| Conread position: | 1-224 |
| Cow position: | chr22:11785317-11785101 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 59, 147 |
| Conread position: | 1-226 |
| Cow position: | chr22:539884-540102 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 55, 147 |
| Conread position: | 1-226 |
| Cow position: | chr22:3275608-3275390 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 56, 147 |
| Conread position: | 1-226 |
| Cow position: | chr22:18197027-18197245 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 55, 147 |
| Conread position: | 1-226 |
| Cow position: | chr22:22934524-22934742 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 56, 142 |
| Conread position: | 1-226 |
| Cow position: | chr22:30675978-30675760 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 56, 147 |
| Conread position: | 1-327 |
| Cow position: | chr22:20238083-20237741 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 1-333 |
| Cow position: | chr22:5931333-5930988 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 57, 142 |
| Conread position: | 1-339 |
| Cow position: | chr22:44100590-44100236 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 247 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 56, 211 |
| Conread position: | 1-353 |
| Cow position: | chr22:33952201-33951833 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 156 |
| Conread position: | 1-358 |
| Cow position: | chr22:15495158-15495512 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 247 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 56, 127 |
| Conread position: | 1-360 |
| Cow position: | chr22:1324885-1325244 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 260 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 50, 149 |
| Conread position: | 1-360 |
| Cow position: | chr22:11609393-11609749 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 150 |
| Conread position: | 1-361 |
| Cow position: | chr22:30089151-30089485 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 266 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 65, 18 |
| Conread position: | 1-361 |
| Cow position: | chr22:36186383-36186745 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 106 |
| Conread position: | 1-363 |
| Cow position: | chr22:51265-51639 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 161 |
| Conread position: | 1-363 |
| Cow position: | chr22:532843-533221 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 1-363 |
| Cow position: | chr22:696679-697058 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 157 |
| Conread position: | 1-363 |
| Cow position: | chr22:981040-981418 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 161 |
| Conread position: | 1-363 |
| Cow position: | chr22:3434214-3433836 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 227 |
| Conread position: | 1-363 |
| Cow position: | chr22:3714754-3714376 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 1-363 |
| Cow position: | chr22:8487124-8486746 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 1-363 |
| Cow position: | chr22:10549481-10549859 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 99 |
| Conread position: | 1-363 |
| Cow position: | chr22:10577739-10577361 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 156 |
| Conread position: | 1-363 |
| Cow position: | chr22:11036256-11036615 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 28 |
| Conread position: | 1-363 |
| Cow position: | chr22:13775254-13775626 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 278 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 49, 133 |
| Conread position: | 1-363 |
| Cow position: | chr22:14629634-14629256 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 1-363 |
| Cow position: | chr22:17325732-17325369 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 119 |
| Conread position: | 1-363 |
| Cow position: | chr22:21756152-21756512 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 49, 128 |
| Conread position: | 1-363 |
| Cow position: | chr22:25725255-25724877 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 1-363 |
| Cow position: | chr22:28129502-28129880 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 347 |
| Conread position: | 1-363 |
| Cow position: | chr22:28713610-28713989 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 157 |
| Conread position: | 1-363 |
| Cow position: | chr22:32338072-32338450 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 1-363 |
| Cow position: | chr22:35162902-35162530 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 138 |
| Conread position: | 1-363 |
| Cow position: | chr22:39902130-39902508 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 1-363 |
| Cow position: | chr22:44381709-44381331 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 1-363 |
| Cow position: | chr22:44461139-44461491 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 87 |
| Conread position: | 1-363 |
| Cow position: | chr22:44494012-44494391 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 142 |
| Conread position: | 1-363 |
| Cow position: | chr22:45280698-45281076 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 147 |
| Conread position: | 1-363 |
| Cow position: | chr22:46578978-46578589 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 262 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 53, 116 |
| Conread position: | 2-337 |
| Cow position: | chr22:10601623-10601965 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 131 |
| Conread position: | 2-361 |
| Cow position: | chr22:12869706-12869332 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 157 |
| Conread position: | 3-218 |
| Cow position: | chr22:45014290-45014067 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 49, 122 |
| Conread position: | 3-363 |
| Cow position: | chr22:2561702-2561343 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 270 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 54, 145 |
| Conread position: | 3-363 |
| Cow position: | chr22:38552798-38553169 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 279 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 44, 119 |
| Conread position: | 4-219 |
| Cow position: | chr22:3806373-3806581 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 53, 144 |
| Conread position: | 5-363 |
| Cow position: | chr22:1483167-1483541 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 260 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 41, 154 |
| Conread position: | 5-363 |
| Cow position: | chr22:20570288-20569914 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 152 |
| Conread position: | 16-307 |
| Cow position: | chr22:41946943-41946636 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 51, 141 |
| Conread position: | 43-363 |
| Cow position: | chr22:18030052-18030379 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 27, 109 |
| Conread position: | 51-363 |
| Cow position: | chr22:15954191-15953870 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 54-363 |
| Cow position: | chr22:45893573-45893894 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 99 |
| Conread position: | 162-362 |
| Cow position: | chr22:46612095-46611888 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 54, 113 |
| Conread position: | 190-363 |
| Cow position: | chr22:5334595-5334417 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 38, 131 |
Show alignments to all cow chromosomes.