Cow genome map
| Conread name: | rtra01_i24r1.y1 |
| Conread position: | 1-125 |
| Cow position: | chr29:16557162-16557289 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 1-219 |
| Cow position: | chr29:13899426-13899638 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 56, 148 |
| Conread position: | 1-219 |
| Cow position: | chr29:17407894-17408099 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 57, 25 |
| Conread position: | 1-219 |
| Cow position: | chr29:32515085-32515297 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 65, 147 |
| Conread position: | 1-226 |
| Cow position: | chr29:607877-607659 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 56, 147 |
| Conread position: | 1-226 |
| Cow position: | chr29:666647-666429 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 55, 147 |
| Conread position: | 1-226 |
| Cow position: | chr29:5426667-5426448 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 56, 148 |
| Conread position: | 1-226 |
| Cow position: | chr29:10845715-10845934 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 52, 148 |
| Conread position: | 1-226 |
| Cow position: | chr29:15623942-15623721 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 118, 67 |
| Conread position: | 1-226 |
| Cow position: | chr29:15995622-15995404 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 56, 147 |
| Conread position: | 1-226 |
| Cow position: | chr29:16036654-16036439 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 67, 144 |
| Conread position: | 1-226 |
| Cow position: | chr29:27813168-27813386 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 27, 148 |
| Conread position: | 1-226 |
| Cow position: | chr29:31764800-31765018 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 57, 145 |
| Conread position: | 1-226 |
| Cow position: | chr29:32556984-32556766 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 55, 142 |
| Conread position: | 1-226 |
| Cow position: | chr29:39424378-39424160 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 55, 147 |
| Conread position: | 1-226 |
| Cow position: | chr29:45207272-45207490 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 56, 147 |
| Conread position: | 1-227 |
| Cow position: | chr29:726489-726708 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 56, 147 |
| Conread position: | 1-227 |
| Cow position: | chr29:13026973-13027201 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 56, 8 |
| Conread position: | 1-334 |
| Cow position: | chr29:9639789-9639444 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 50, 166 |
| Conread position: | 1-340 |
| Cow position: | chr29:32352378-32352733 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 250 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 65, 156 |
| Conread position: | 1-345 |
| Cow position: | chr29:31123605-31123245 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 147 |
| Conread position: | 1-358 |
| Cow position: | chr29:32291360-32291726 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 152 |
| Conread position: | 1-361 |
| Cow position: | chr29:2464111-2463736 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 246 |
| Conread position: | 1-361 |
| Cow position: | chr29:7847149-7847526 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 156 |
| Conread position: | 1-363 |
| Cow position: | chr29:408502-408126 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 1-363 |
| Cow position: | chr29:2429868-2430229 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 153 |
| Conread position: | 1-363 |
| Cow position: | chr29:16064471-16064849 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 156 |
| Conread position: | 1-363 |
| Cow position: | chr29:19525529-19525151 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 156 |
| Conread position: | 1-363 |
| Cow position: | chr29:21226737-21227114 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 1-363 |
| Cow position: | chr29:22745660-22746038 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 1-363 |
| Cow position: | chr29:31094826-31094448 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 1-363 |
| Cow position: | chr29:31184136-31184514 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 156 |
| Conread position: | 1-363 |
| Cow position: | chr29:32289151-32289529 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 207 |
| Conread position: | 1-363 |
| Cow position: | chr29:34524562-34524184 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 1-363 |
| Cow position: | chr29:35299680-35300057 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 156 |
| Conread position: | 1-363 |
| Cow position: | chr29:40294092-40294445 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 149 |
| Conread position: | 1-363 |
| Cow position: | chr29:40471425-40471803 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 1-363 |
| Cow position: | chr29:40619089-40618712 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 156 |
| Conread position: | 1-363 |
| Cow position: | chr29:42256218-42255840 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 3-224 |
| Cow position: | chr29:43255644-43255433 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 63, 83 |
| Conread position: | 7-363 |
| Cow position: | chr29:2483674-2484046 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 150 |
| Conread position: | 10-226 |
| Cow position: | chr29:15943120-15943331 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 42, 142 |
| Conread position: | 25-226 |
| Cow position: | chr29:43728096-43728314 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 51-363 |
| Cow position: | chr29:35264733-35265055 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 100 |
| Conread position: | 69-363 |
| Cow position: | chr29:15699146-15699450 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 217 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 106, 82 |
| Conread position: | 70-363 |
| Cow position: | chr29:24806291-24806593 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 218 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 105, 81 |
| Conread position: | 76-363 |
| Cow position: | chr29:3585368-3585074 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 68, 224 |
| Conread position: | 162-363 |
| Cow position: | chr29:11364957-11365158 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 42, 51 |
Show alignments to all cow chromosomes.