Cow genome map
| Conread name: | rtra01_i24r1.y1 |
| Conread position: | 1-140 |
| Cow position: | chr3:15052892-15052749 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 60, 133 |
| Conread position: | 1-140 |
| Cow position: | chr3:36614584-36614439 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-140 |
| Cow position: | chr3:38529092-38528947 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 1-217 |
| Cow position: | chr3:6785083-6785291 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 56, 147 |
| Conread position: | 1-218 |
| Cow position: | chr3:81979857-81979648 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 68, 101 |
| Conread position: | 1-219 |
| Cow position: | chr3:3653609-3653401 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 52, 7 |
| Conread position: | 1-219 |
| Cow position: | chr3:25689327-25689540 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 56, 149 |
| Conread position: | 1-219 |
| Cow position: | chr3:74060148-74060359 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 56, 147 |
| Conread position: | 1-226 |
| Cow position: | chr3:2920921-2921153 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 55, 39 |
| Conread position: | 1-226 |
| Cow position: | chr3:6441337-6441555 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 56, 147 |
| Conread position: | 1-226 |
| Cow position: | chr3:7246429-7246212 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 56, 39 |
| Conread position: | 1-226 |
| Cow position: | chr3:13724038-13723821 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 56, 96 |
| Conread position: | 1-226 |
| Cow position: | chr3:18862115-18862333 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 55, 142 |
| Conread position: | 1-226 |
| Cow position: | chr3:23010046-23010264 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 56, 147 |
| Conread position: | 1-226 |
| Cow position: | chr3:24443420-24443202 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 66, 147 |
| Conread position: | 1-226 |
| Cow position: | chr3:27921122-27921345 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 56, 33 |
| Conread position: | 1-226 |
| Cow position: | chr3:36120558-36120776 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 65, 154 |
| Conread position: | 1-226 |
| Cow position: | chr3:37971718-37971935 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 56, 147 |
| Conread position: | 1-226 |
| Cow position: | chr3:40337469-40337251 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 65, 145 |
| Conread position: | 1-226 |
| Cow position: | chr3:43190596-43190378 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 56, 147 |
| Conread position: | 1-226 |
| Cow position: | chr3:47078940-47078722 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 57, 147 |
| Conread position: | 1-226 |
| Cow position: | chr3:49563684-49563903 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 56, 145 |
| Conread position: | 1-226 |
| Cow position: | chr3:50920709-50920927 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 56, 33 |
| Conread position: | 1-226 |
| Cow position: | chr3:53880593-53880375 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 56, 147 |
| Conread position: | 1-226 |
| Cow position: | chr3:56337280-56337062 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 66, 147 |
| Conread position: | 1-226 |
| Cow position: | chr3:56485586-56485368 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 55, 147 |
| Conread position: | 1-226 |
| Cow position: | chr3:63000687-63000466 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 56, 145 |
| Conread position: | 1-226 |
| Cow position: | chr3:66888522-66888304 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 56, 142 |
| Conread position: | 1-226 |
| Cow position: | chr3:66969206-66968987 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 56, 148 |
| Conread position: | 1-226 |
| Cow position: | chr3:68871076-68870858 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 65, 145 |
| Conread position: | 1-226 |
| Cow position: | chr3:75165405-75165193 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 69, 26 |
| Conread position: | 1-226 |
| Cow position: | chr3:83766927-83767145 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 55, 147 |
| Conread position: | 1-227 |
| Cow position: | chr3:48525415-48525634 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 56, 146 |
| Conread position: | 1-306 |
| Cow position: | chr3:34458192-34457872 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 1-345 |
| Cow position: | chr3:49908338-49907989 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 56, 152 |
| Conread position: | 1-349 |
| Cow position: | chr3:72389646-72389988 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 240 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 56, 146 |
| Conread position: | 1-358 |
| Cow position: | chr3:29644030-29644397 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 274 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 51, 122 |
| Conread position: | 1-361 |
| Cow position: | chr3:14467202-14466828 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 273 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 52, 145 |
| Conread position: | 1-362 |
| Cow position: | chr3:16294235-16293858 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 146 |
| Conread position: | 1-363 |
| Cow position: | chr3:1033536-1033914 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 182 |
| Conread position: | 1-363 |
| Cow position: | chr3:6713683-6714059 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 1-363 |
| Cow position: | chr3:6837723-6838081 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 147 |
| Conread position: | 1-363 |
| Cow position: | chr3:10243335-10243713 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 211 |
| Conread position: | 1-363 |
| Cow position: | chr3:15416140-15416518 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 1-363 |
| Cow position: | chr3:15656613-15656258 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 248 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 56, 149 |
| Conread position: | 1-363 |
| Cow position: | chr3:21004489-21004864 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 156 |
| Conread position: | 1-363 |
| Cow position: | chr3:21179582-21179207 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 132 |
| Conread position: | 1-363 |
| Cow position: | chr3:26743197-26742821 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 142 |
| Conread position: | 1-363 |
| Cow position: | chr3:31021357-31021734 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 1-363 |
| Cow position: | chr3:31396072-31396426 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 149 |
| Conread position: | 1-363 |
| Cow position: | chr3:32220415-32220776 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 22 |
| Conread position: | 1-363 |
| Cow position: | chr3:32413015-32412637 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 1-363 |
| Cow position: | chr3:32620367-32619990 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 280 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 56, 142 |
| Conread position: | 1-363 |
| Cow position: | chr3:34015016-34015394 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 1-363 |
| Cow position: | chr3:34504449-34504071 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 1-363 |
| Cow position: | chr3:35611828-35612206 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 187 |
| Conread position: | 1-363 |
| Cow position: | chr3:37280069-37280447 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 1-363 |
| Cow position: | chr3:41082837-41083215 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 156 |
| Conread position: | 1-363 |
| Cow position: | chr3:42748049-42747670 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 157 |
| Conread position: | 1-363 |
| Cow position: | chr3:43526065-43525687 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 156 |
| Conread position: | 1-363 |
| Cow position: | chr3:45692344-45691986 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 12 |
| Conread position: | 1-363 |
| Cow position: | chr3:49998812-49999188 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 156 |
| Conread position: | 1-363 |
| Cow position: | chr3:53048107-53047740 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 20 |
| Conread position: | 1-363 |
| Cow position: | chr3:61677215-61677590 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 160 |
| Conread position: | 1-363 |
| Cow position: | chr3:65177684-65178062 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 156 |
| Conread position: | 1-363 |
| Cow position: | chr3:68718032-68717658 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 46 |
| Conread position: | 2-135 |
| Cow position: | chr3:40005218-40005079 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 2-219 |
| Cow position: | chr3:41207922-41207712 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 55, 146 |
| Conread position: | 2-226 |
| Cow position: | chr3:76001280-76001063 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 55, 146 |
| Conread position: | 2-271 |
| Cow position: | chr3:5497761-5497493 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 55, 118 |
| Conread position: | 3-347 |
| Cow position: | chr3:6896518-6896863 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 244 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 63, 145 |
| Conread position: | 4-363 |
| Cow position: | chr3:6864344-6864712 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 144 |
| Conread position: | 12-363 |
| Cow position: | chr3:58128744-58129101 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 26, 41 |
| Conread position: | 16-363 |
| Cow position: | chr3:49605750-49605389 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 141 |
| Conread position: | 24-363 |
| Cow position: | chr3:76864128-76864483 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 249 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 32, 133 |
| Conread position: | 43-363 |
| Cow position: | chr3:32490997-32490661 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 240 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 13, 114 |
| Conread position: | 162-349 |
| Cow position: | chr3:77726303-77726498 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 68, 89 |
| Conread position: | 163-361 |
| Cow position: | chr3:78519909-78520097 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 111, 48 |
Show alignments to all cow chromosomes.