Cow genome map
| Conread name: | rtra01_i24r1.y1 |
| Conread position: | 1-139 |
| Cow position: | chr4:9978002-9977858 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-140 |
| Cow position: | chr4:58622046-58621901 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-214 |
| Cow position: | chr4:67681515-67681297 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 66, 131 |
| Conread position: | 1-217 |
| Cow position: | chr4:32214634-32214842 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 56, 145 |
| Conread position: | 1-219 |
| Cow position: | chr4:3128294-3128505 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 65, 147 |
| Conread position: | 1-219 |
| Cow position: | chr4:5442025-5441814 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 55, 147 |
| Conread position: | 1-219 |
| Cow position: | chr4:30473913-30474124 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 55, 147 |
| Conread position: | 1-226 |
| Cow position: | chr4:6266734-6266516 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 56, 147 |
| Conread position: | 1-226 |
| Cow position: | chr4:9040424-9040643 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 67, 148 |
| Conread position: | 1-226 |
| Cow position: | chr4:10121944-10121726 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 56, 147 |
| Conread position: | 1-226 |
| Cow position: | chr4:10884117-10884336 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 56, 20 |
| Conread position: | 1-226 |
| Cow position: | chr4:17539530-17539314 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 56, 91 |
| Conread position: | 1-226 |
| Cow position: | chr4:18330522-18330304 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 55, 147 |
| Conread position: | 1-226 |
| Cow position: | chr4:25597007-25596788 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 56, 152 |
| Conread position: | 1-226 |
| Cow position: | chr4:28835041-28835259 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 65, 133 |
| Conread position: | 1-226 |
| Cow position: | chr4:31485503-31485285 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 55, 147 |
| Conread position: | 1-226 |
| Cow position: | chr4:47263256-47263473 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 56, 96 |
| Conread position: | 1-226 |
| Cow position: | chr4:56014135-56013917 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 55, 147 |
| Conread position: | 1-334 |
| Cow position: | chr4:5486913-5486561 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 159 |
| Conread position: | 1-336 |
| Cow position: | chr4:62558089-62557738 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 159 |
| Conread position: | 1-343 |
| Cow position: | chr4:8935093-8935452 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 253 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 56, 212 |
| Conread position: | 1-353 |
| Cow position: | chr4:30284256-30284602 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 33, 144 |
| Conread position: | 1-356 |
| Cow position: | chr4:13464292-13464662 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 1-358 |
| Cow position: | chr4:55272621-55273005 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 267 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 51, 120 |
| Conread position: | 1-361 |
| Cow position: | chr4:3069401-3069776 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 156 |
| Conread position: | 1-361 |
| Cow position: | chr4:13328154-13328519 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 145 |
| Conread position: | 1-361 |
| Cow position: | chr4:16061760-16062144 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 265 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 1-361 |
| Cow position: | chr4:41961377-41961751 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 20 |
| Conread position: | 1-362 |
| Cow position: | chr4:8768239-8768609 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 232 |
| Conread position: | 1-362 |
| Cow position: | chr4:12606401-12606015 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 276 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 49, 159 |
| Conread position: | 1-363 |
| Cow position: | chr4:5579313-5578935 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 147 |
| Conread position: | 1-363 |
| Cow position: | chr4:7778879-7779257 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 156 |
| Conread position: | 1-363 |
| Cow position: | chr4:8673212-8673591 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 270 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 68, 160 |
| Conread position: | 1-363 |
| Cow position: | chr4:8677282-8677658 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 96 |
| Conread position: | 1-363 |
| Cow position: | chr4:15874144-15873777 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 258 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 174, 32 |
| Conread position: | 1-363 |
| Cow position: | chr4:17234506-17234878 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 167 |
| Conread position: | 1-363 |
| Cow position: | chr4:17876448-17876821 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 208 |
| Conread position: | 1-363 |
| Cow position: | chr4:19236562-19236926 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 53 |
| Conread position: | 1-363 |
| Cow position: | chr4:27881371-27881749 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 1-363 |
| Cow position: | chr4:38153798-38153447 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 150 |
| Conread position: | 1-363 |
| Cow position: | chr4:40217321-40217695 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 152 |
| Conread position: | 1-363 |
| Cow position: | chr4:41473351-41472973 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 147 |
| Conread position: | 1-363 |
| Cow position: | chr4:44778714-44778336 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 1-363 |
| Cow position: | chr4:47055947-47055571 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 1-363 |
| Cow position: | chr4:59783193-59783534 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 265 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 65, 32 |
| Conread position: | 1-363 |
| Cow position: | chr4:62907542-62907164 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 1-363 |
| Cow position: | chr4:67393706-67394084 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 156 |
| Conread position: | 1-363 |
| Cow position: | chr4:68809617-68809977 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 152 |
| Conread position: | 3-226 |
| Cow position: | chr4:12584142-12583926 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 53, 145 |
| Conread position: | 3-363 |
| Cow position: | chr4:54811380-54810990 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 53, 145 |
| Conread position: | 5-363 |
| Cow position: | chr4:40697984-40697610 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 152 |
| Conread position: | 6-225 |
| Cow position: | chr4:34712293-34712515 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 51, 161 |
| Conread position: | 7-363 |
| Cow position: | chr4:44593890-44593535 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 259 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 51, 139 |
| Conread position: | 8-226 |
| Cow position: | chr4:58291227-58291438 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 49, 140 |
| Conread position: | 8-363 |
| Cow position: | chr4:21341559-21341930 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 149 |
| Conread position: | 8-363 |
| Cow position: | chr4:34385095-34384745 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 44, 149 |
| Conread position: | 9-362 |
| Cow position: | chr4:2264216-2263854 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 132 |
| Conread position: | 23-226 |
| Cow position: | chr4:532546-532742 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 34, 125 |
| Conread position: | 63-363 |
| Cow position: | chr4:27891621-27891930 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 112, 12 |
| Conread position: | 72-363 |
| Cow position: | chr4:26745077-26745378 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 213 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 103, 79 |
| Conread position: | 103-363 |
| Cow position: | chr4:10424079-10424349 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 72, 48 |
Show alignments to all cow chromosomes.