Cow genome map

Conread name: rtra01_i24r1.y1

Conread position: 1-136
Cow position: chr6:13367797-13367938 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 113
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 55, 0

Conread position: 1-140
Cow position: chr6:46296991-46297136 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 115
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 55, 0

Conread position: 1-140
Cow position: chr6:53810335-53810475 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 110
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 71, 0

Conread position: 1-148
Cow position: chr6:40318309-40318462 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 113
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 56, 0

Conread position: 1-186
Cow position: chr6:18912756-18912565 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 111
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 56, 0

Conread position: 1-212
Cow position: chr6:50112806-50112996 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 158
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 58, 0

Conread position: 1-214
Cow position: chr6:33810509-33810715 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 161
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 55, 147

Conread position: 1-219
Cow position: chr6:43620449-43620660 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 170
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 56, 147

Conread position: 1-226
Cow position: chr6:1795949-1795732 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 171
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 56, 142

Conread position: 1-226
Cow position: chr6:2377422-2377640 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 172
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 59, 154

Conread position: 1-226
Cow position: chr6:2876313-2876095 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 172
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 56, 142

Conread position: 1-226
Cow position: chr6:7138622-7138404 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 179
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 56, 145

Conread position: 1-226
Cow position: chr6:7467933-7467714 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 179
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 56, 148

Conread position: 1-226
Cow position: chr6:12351547-12351764 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 173
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 65, 133

Conread position: 1-226
Cow position: chr6:12663597-12663379 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 175
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 56, 147

Conread position: 1-226
Cow position: chr6:14928177-14928395 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 172
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 67, 145

Conread position: 1-226
Cow position: chr6:15138448-15138230 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 176
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 56, 149

Conread position: 1-226
Cow position: chr6:19713514-19713298 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 172
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 55, 145

Conread position: 1-226
Cow position: chr6:21711279-21711497 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 177
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 56, 147

Conread position: 1-226
Cow position: chr6:28185612-28185394 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 174
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 55, 147

Conread position: 1-226
Cow position: chr6:28400533-28400315 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 172
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 55, 147

Conread position: 1-226
Cow position: chr6:34018131-34018349 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 174
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 65, 147

Conread position: 1-226
Cow position: chr6:39912043-39912261 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 176
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 56, 147

Conread position: 1-226
Cow position: chr6:45591266-45591484 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 170
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 55, 147

Conread position: 1-226
Cow position: chr6:45937015-45937234 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 171
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 55, 148

Conread position: 1-226
Cow position: chr6:45975227-45975445 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 170
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 55, 147

Conread position: 1-226
Cow position: chr6:51149660-51149878 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 173
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 59, 147

Conread position: 1-226
Cow position: chr6:51867713-51867931 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 171
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 57, 147

Conread position: 1-271
Cow position: chr6:39435203-39434925 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 214
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 35, 152

Conread position: 1-301
Cow position: chr6:28001662-28001342 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 224
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 55, 160

Conread position: 1-301
Cow position: chr6:35967748-35967432 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 223
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 55, 156

Conread position: 1-318
Cow position: chr6:12971199-12970871 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 230
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 55, 156

Conread position: 1-357
Cow position: chr6:24624678-24624333 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 247
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 65, 149

Conread position: 1-361
Cow position: chr6:11870213-11869840 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 208

Conread position: 1-362
Cow position: chr6:10267374-10266996 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 0

Conread position: 1-362
Cow position: chr6:66189082-66188705 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 156

Conread position: 1-363
Cow position: chr6:127414-127036 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 156

Conread position: 1-363
Cow position: chr6:3272762-3272385 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 211

Conread position: 1-363
Cow position: chr6:3485680-3485323 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 145

Conread position: 1-363
Cow position: chr6:4904256-4903890 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 67

Conread position: 1-363
Cow position: chr6:6120261-6119891 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 147

Conread position: 1-363
Cow position: chr6:10043933-10044311 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 156

Conread position: 1-363
Cow position: chr6:11019375-11019753 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 156

Conread position: 1-363
Cow position: chr6:13308667-13308301 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 145

Conread position: 1-363
Cow position: chr6:16418962-16418586 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 274
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 56, 28

Conread position: 1-363
Cow position: chr6:16704014-16703647 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 140

Conread position: 1-363
Cow position: chr6:16767118-16766744 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 156

Conread position: 1-363
Cow position: chr6:17595567-17595189 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 156

Conread position: 1-363
Cow position: chr6:20351371-20350993 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 156

Conread position: 1-363
Cow position: chr6:22679573-22679951 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 156

Conread position: 1-363
Cow position: chr6:26325481-26325103 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 147

Conread position: 1-363
Cow position: chr6:27151722-27151345 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 156

Conread position: 1-363
Cow position: chr6:27475132-27475507 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 46

Conread position: 1-363
Cow position: chr6:28064709-28065087 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 156

Conread position: 1-363
Cow position: chr6:28488847-28488482 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 144

Conread position: 1-363
Cow position: chr6:34129175-34129553 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 157

Conread position: 1-363
Cow position: chr6:36230808-36230430 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 156

Conread position: 1-363
Cow position: chr6:37387298-37387674 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 209

Conread position: 1-363
Cow position: chr6:40277777-40278155 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 156

Conread position: 1-363
Cow position: chr6:41389734-41389360 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 277
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 51, 155

Conread position: 1-363
Cow position: chr6:43087874-43087494 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 156

Conread position: 1-363
Cow position: chr6:50720816-50721194 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 142

Conread position: 1-363
Cow position: chr6:55238413-55238792 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 157

Conread position: 1-363
Cow position: chr6:56452377-56451999 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 156

Conread position: 1-363
Cow position: chr6:60378881-60379259 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 156

Conread position: 1-363
Cow position: chr6:62664493-62664871 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 156

Conread position: 2-226
Cow position: chr6:4467325-4467547 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 171
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 43, 95

Conread position: 2-353
Cow position: chr6:18497038-18497386 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 246
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 67, 147

Conread position: 2-363
Cow position: chr6:6474718-6474351 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 161

Conread position: 2-363
Cow position: chr6:8204899-8205284 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 84

Conread position: 2-363
Cow position: chr6:14065167-14065540 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 258
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 55, 192

Conread position: 2-363
Cow position: chr6:27172549-27172925 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 155

Conread position: 2-363
Cow position: chr6:43186823-43187201 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 211

Conread position: 3-226
Cow position: chr6:26668304-26668087 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 170
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 54, 146

Conread position: 3-226
Cow position: chr6:51717266-51717492 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 168
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 54, 138

Conread position: 3-362
Cow position: chr6:6720702-6721066 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 154

Conread position: 3-363
Cow position: chr6:11354443-11354082 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 145

Conread position: 5-218
Cow position: chr6:65929968-65930173 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 158
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 51, 126

Conread position: 5-363
Cow position: chr6:31913453-31913079 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 152

Conread position: 8-219
Cow position: chr6:20553516-20553312 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 165
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 49, 138

Conread position: 18-363
Cow position: chr6:27761435-27761798 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 141

Conread position: 51-363
Cow position: chr6:888331-888653 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 226
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 124, 100

Conread position: 54-361
Cow position: chr6:1402751-1402435 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 223
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 121, 100

Conread position: 54-361
Cow position: chr6:1407339-1407023 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 223
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 121, 100

Conread position: 59-339
Cow position: chr6:9586845-9587137 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 210
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 12, 94

Conread position: 69-363
Cow position: chr6:49826460-49826156 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 220
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 106, 82

Conread position: 103-363
Cow position: chr6:6556787-6557057 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 191
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 72, 48

Show alignments to all cow chromosomes.