Cow genome map

Conread name: rtra01_i24r1.y1

Conread position: 1-140
Cow position:
Alignm length: 148
Alignm identity: 121
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 49, 0

Conread position: 1-140
Cow position:
Alignm length: 146
Alignm identity: 118
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 56, 0

Conread position: 1-140
Cow position:
Alignm length: 146
Alignm identity: 113
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 56, 0

Conread position: 1-140
Cow position:
Alignm length: 148
Alignm identity: 117
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 65, 0

Conread position: 1-143
Cow position:
Alignm length: 154
Alignm identity: 117
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 49, 0

Conread position: 1-214
Cow position:
Alignm length: 220
Alignm identity: 153
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 50, 103

Conread position: 1-219
Cow position:
Alignm length: 223
Alignm identity: 162
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 59, 138

Conread position: 1-226
Cow position:
Alignm length: 234
Alignm identity: 173
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 56, 144

Conread position: 1-226
Cow position:
Alignm length: 238
Alignm identity: 165
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 56, 0

Conread position: 1-226
Cow position:
Alignm length: 232
Alignm identity: 178
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 56, 147

Conread position: 1-226
Cow position:
Alignm length: 232
Alignm identity: 175
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 56, 145

Conread position: 1-226
Cow position:
Alignm length: 232
Alignm identity: 172
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 55, 147

Conread position: 1-226
Cow position:
Alignm length: 232
Alignm identity: 172
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 55, 147

Conread position: 1-226
Cow position:
Alignm length: 232
Alignm identity: 178
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 65, 147

Conread position: 1-226
Cow position:
Alignm length: 233
Alignm identity: 168
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 56, 27

Conread position: 1-226
Cow position:
Alignm length: 232
Alignm identity: 174
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 56, 147

Conread position: 1-226
Cow position:
Alignm length: 232
Alignm identity: 174
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 56, 136

Conread position: 1-226
Cow position:
Alignm length: 232
Alignm identity: 173
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 56, 142

Conread position: 1-226
Cow position:
Alignm length: 232
Alignm identity: 177
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 55, 147

Conread position: 1-226
Cow position:
Alignm length: 236
Alignm identity: 168
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 65, 46

Conread position: 1-226
Cow position:
Alignm length: 232
Alignm identity: 179
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 55, 145

Conread position: 1-226
Cow position:
Alignm length: 236
Alignm identity: 170
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 65, 96

Conread position: 1-226
Cow position:
Alignm length: 232
Alignm identity: 175
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 55, 145

Conread position: 1-226
Cow position:
Alignm length: 239
Alignm identity: 173
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 56, 126

Conread position: 1-226
Cow position:
Alignm length: 232
Alignm identity: 174
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 56, 27

Conread position: 1-227
Cow position:
Alignm length: 235
Alignm identity: 174
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 56, 149

Conread position: 1-230
Cow position:
Alignm length: 236
Alignm identity: 176
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 56, 147

Conread position: 1-340
Cow position:
Alignm length: 355
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 225

Conread position: 1-353
Cow position:
Alignm length: 369
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 188

Conread position: 1-357
Cow position:
Alignm length: 373
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 1-359
Cow position:
Alignm length: 383
Alignm identity: 261
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 21, 149

Conread position: 1-361
Cow position:
Alignm length: 379
Alignm identity: 259
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 54, 144

Conread position: 1-361
Cow position:
Alignm length: 379
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 187

Conread position: 1-361
Cow position:
Alignm length: 376
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 185

Conread position: 1-361
Cow position:
Alignm length: 387
Alignm identity: 272
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 49, 0

Conread position: 1-363
Cow position:
Alignm length: 380
Alignm identity: 260
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 57, 146

Conread position: 1-363
Cow position:
Alignm length: 378
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 156

Conread position: 1-363
Cow position:
Alignm length: 374
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 77

Conread position: 1-363
Cow position:
Alignm length: 376
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 152

Conread position: 1-363
Cow position:
Alignm length: 381
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 156

Conread position: 1-363
Cow position:
Alignm length: 373
Alignm identity: 254
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 155, 33

Conread position: 1-363
Cow position:
Alignm length: 380
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 156

Conread position: 1-363
Cow position:
Alignm length: 380
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 156

Conread position: 1-363
Cow position:
Alignm length: 385
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 185

Conread position: 1-363
Cow position:
Alignm length: 380
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 156

Conread position: 1-363
Cow position:
Alignm length: 386
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 163

Conread position: 1-363
Cow position:
Alignm length: 380
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 156

Conread position: 1-363
Cow position:
Alignm length: 381
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 97

Conread position: 1-363
Cow position:
Alignm length: 380
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 0

Conread position: 1-363
Cow position:
Alignm length: 373
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 146

Conread position: 1-363
Cow position:
Alignm length: 380
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 156

Conread position: 1-363
Cow position:
Alignm length: 380
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 156

Conread position: 1-363
Cow position:
Alignm length: 373
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 174

Conread position: 1-363
Cow position:
Alignm length: 378
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 96

Conread position: 1-363
Cow position:
Alignm length: 378
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 156

Conread position: 1-363
Cow position:
Alignm length: 391
Alignm identity: 280
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 56, 147

Conread position: 1-363
Cow position:
Alignm length: 382
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 168

Conread position: 1-363
Cow position:
Alignm length: 383
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 156

Conread position: 1-363
Cow position:
Alignm length: 383
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 159

Conread position: 1-363
Cow position:
Alignm length: 388
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 147

Conread position: 1-363
Cow position:
Alignm length: 380
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 25

Conread position: 1-363
Cow position:
Alignm length: 380
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 156

Conread position: 1-363
Cow position:
Alignm length: 381
Alignm identity: 263
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 65, 211

Conread position: 1-363
Cow position:
Alignm length: 383
Alignm identity: 273
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 36, 96

Conread position: 1-363
Cow position:
Alignm length: 380
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 156

Conread position: 2-333
Cow position:
Alignm length: 350
Alignm identity: 243
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 55, 210

Conread position: 2-363
Cow position:
Alignm length: 368
Alignm identity: 238
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 45, 94

Conread position: 3-217
Cow position:
Alignm length: 229
Alignm identity: 166
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 53, 138

Conread position: 3-226
Cow position:
Alignm length: 230
Alignm identity: 169
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 53, 142

Conread position: 3-362
Cow position:
Alignm length: 388
Alignm identity: 267
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 63, 228

Conread position: 3-363
Cow position:
Alignm length: 374
Alignm identity: 243
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 54, 138

Conread position: 3-363
Cow position:
Alignm length: 378
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Conread position: 3-363
Cow position:
Alignm length: 381
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 102

Conread position: 5-226
Cow position:
Alignm length: 229
Alignm identity: 168
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 52, 144

Conread position: 5-363
Cow position:
Alignm length: 378
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 185

Conread position: 6-226
Cow position:
Alignm length: 227
Alignm identity: 172
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 51, 28

Conread position: 8-363
Cow position:
Alignm length: 373
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 149

Conread position: 9-363
Cow position:
Alignm length: 378
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 148

Conread position: 10-363
Cow position:
Alignm length: 371
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 147

Conread position: 16-363
Cow position:
Alignm length: 364
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 194

Conread position: 17-226
Cow position:
Alignm length: 216
Alignm identity: 160
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 49, 129

Conread position: 17-363
Cow position:
Alignm length: 364
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 140

Conread position: 28-289
Cow position:
Alignm length: 279
Alignm identity: 188
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 28, 129

Conread position: 54-226
Cow position:
Alignm length: 174
Alignm identity: 129
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 109, 79

Show alignments to all cow chromosomes.