Cow genome map
| Conread name: | rtra01_i24r1.y1 |
| Conread position: | 1-140 |
| Cow position: | chr7:3122688-3122835 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 1-140 |
| Cow position: | chr7:8338189-8338334 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 1-140 |
| Cow position: | chr7:54547457-54547312 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 1-140 |
| Cow position: | chr7:65625063-65624916 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 1-143 |
| Cow position: | chr7:68853159-68853006 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 1-214 |
| Cow position: | chr7:67431348-67431559 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 50, 103 |
| Conread position: | 1-219 |
| Cow position: | chr7:1556214-1556423 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 59, 138 |
| Conread position: | 1-226 |
| Cow position: | chr7:113424-113644 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 56, 144 |
| Conread position: | 1-226 |
| Cow position: | chr7:844712-844949 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 1-226 |
| Cow position: | chr7:1331604-1331386 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 56, 147 |
| Conread position: | 1-226 |
| Cow position: | chr7:6666310-6666528 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 175 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 56, 145 |
| Conread position: | 1-226 |
| Cow position: | chr7:6722844-6723062 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 55, 147 |
| Conread position: | 1-226 |
| Cow position: | chr7:7277219-7277437 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 55, 147 |
| Conread position: | 1-226 |
| Cow position: | chr7:19181823-19182041 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 65, 147 |
| Conread position: | 1-226 |
| Cow position: | chr7:21232206-21231981 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 56, 27 |
| Conread position: | 1-226 |
| Cow position: | chr7:27099460-27099242 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 56, 147 |
| Conread position: | 1-226 |
| Cow position: | chr7:29473254-29473472 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 56, 136 |
| Conread position: | 1-226 |
| Cow position: | chr7:34818868-34819086 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 56, 142 |
| Conread position: | 1-226 |
| Cow position: | chr7:37165672-37165890 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 55, 147 |
| Conread position: | 1-226 |
| Cow position: | chr7:49071180-49070946 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 65, 46 |
| Conread position: | 1-226 |
| Cow position: | chr7:49826281-49826063 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 55, 145 |
| Conread position: | 1-226 |
| Cow position: | chr7:55041316-55041541 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 65, 96 |
| Conread position: | 1-226 |
| Cow position: | chr7:60465523-60465741 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 55, 145 |
| Conread position: | 1-226 |
| Cow position: | chr7:61832688-61832464 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 56, 126 |
| Conread position: | 1-226 |
| Cow position: | chr7:67677730-67677945 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 56, 27 |
| Conread position: | 1-227 |
| Cow position: | chr7:66299345-66299124 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 56, 149 |
| Conread position: | 1-230 |
| Cow position: | chr7:27572057-27572279 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 56, 147 |
| Conread position: | 1-340 |
| Cow position: | chr7:62952157-62952510 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 225 |
| Conread position: | 1-353 |
| Cow position: | chr7:43395211-43394844 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 188 |
| Conread position: | 1-357 |
| Cow position: | chr7:60758384-60758012 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-359 |
| Cow position: | chr7:42428408-42428777 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 261 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 21, 149 |
| Conread position: | 1-361 |
| Cow position: | chr7:16844639-16845008 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 54, 144 |
| Conread position: | 1-361 |
| Cow position: | chr7:53363385-53363009 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 187 |
| Conread position: | 1-361 |
| Cow position: | chr7:64354828-64355201 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 185 |
| Conread position: | 1-361 |
| Cow position: | chr7:65870697-65870311 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 272 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 1-363 |
| Cow position: | chr7:99752-99387 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 260 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 57, 146 |
| Conread position: | 1-363 |
| Cow position: | chr7:982783-982407 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 1-363 |
| Cow position: | chr7:1601213-1600841 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 77 |
| Conread position: | 1-363 |
| Cow position: | chr7:3158107-3158480 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 152 |
| Conread position: | 1-363 |
| Cow position: | chr7:3297869-3297490 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 1-363 |
| Cow position: | chr7:5251331-5250976 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 254 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 155, 33 |
| Conread position: | 1-363 |
| Cow position: | chr7:6626564-6626186 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 1-363 |
| Cow position: | chr7:6628958-6628580 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 1-363 |
| Cow position: | chr7:8742472-8742089 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 185 |
| Conread position: | 1-363 |
| Cow position: | chr7:18865028-18864650 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 156 |
| Conread position: | 1-363 |
| Cow position: | chr7:19097493-19097109 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 163 |
| Conread position: | 1-363 |
| Cow position: | chr7:20434647-20435025 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 156 |
| Conread position: | 1-363 |
| Cow position: | chr7:20796648-20796270 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 97 |
| Conread position: | 1-363 |
| Cow position: | chr7:23140361-23140740 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 1-363 |
| Cow position: | chr7:24874473-24874110 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 146 |
| Conread position: | 1-363 |
| Cow position: | chr7:26927366-26926989 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 156 |
| Conread position: | 1-363 |
| Cow position: | chr7:29381719-29382097 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 1-363 |
| Cow position: | chr7:33065902-33065543 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 174 |
| Conread position: | 1-363 |
| Cow position: | chr7:33334265-33334636 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 96 |
| Conread position: | 1-363 |
| Cow position: | chr7:36343971-36343595 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 1-363 |
| Cow position: | chr7:42302618-42302243 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 280 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 56, 147 |
| Conread position: | 1-363 |
| Cow position: | chr7:45766513-45766138 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 168 |
| Conread position: | 1-363 |
| Cow position: | chr7:46265974-46266355 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 1-363 |
| Cow position: | chr7:48637525-48637905 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 159 |
| Conread position: | 1-363 |
| Cow position: | chr7:50960891-50961265 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 147 |
| Conread position: | 1-363 |
| Cow position: | chr7:58336212-58335840 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 25 |
| Conread position: | 1-363 |
| Cow position: | chr7:62702836-62702458 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 156 |
| Conread position: | 1-363 |
| Cow position: | chr7:64012235-64012613 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 263 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 65, 211 |
| Conread position: | 1-363 |
| Cow position: | chr7:65326929-65326566 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 273 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 36, 96 |
| Conread position: | 1-363 |
| Cow position: | chr7:65813648-65814026 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 156 |
| Conread position: | 2-333 |
| Cow position: | chr7:52762838-52762491 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 243 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 55, 210 |
| Conread position: | 2-363 |
| Cow position: | chr7:21850568-21850217 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 238 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 45, 94 |
| Conread position: | 3-217 |
| Cow position: | chr7:51017036-51017253 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 53, 138 |
| Conread position: | 3-226 |
| Cow position: | chr7:13100-12884 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 53, 142 |
| Conread position: | 3-362 |
| Cow position: | chr7:51674543-51674927 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 267 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 63, 228 |
| Conread position: | 3-363 |
| Cow position: | chr7:54698640-54699000 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 54, 138 |
| Conread position: | 3-363 |
| Cow position: | chr7:60727644-60727267 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 3-363 |
| Cow position: | chr7:64352777-64353156 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 102 |
| Conread position: | 5-226 |
| Cow position: | chr7:65557605-65557390 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 52, 144 |
| Conread position: | 5-363 |
| Cow position: | chr7:59774125-59774499 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 185 |
| Conread position: | 6-226 |
| Cow position: | chr7:63388812-63389023 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 51, 28 |
| Conread position: | 8-363 |
| Cow position: | chr7:21323079-21323450 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 149 |
| Conread position: | 9-363 |
| Cow position: | chr7:33309432-33309056 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 148 |
| Conread position: | 10-363 |
| Cow position: | chr7:31260139-31259770 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 147 |
| Conread position: | 16-363 |
| Cow position: | chr7:42430463-42430824 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 194 |
| Conread position: | 17-226 |
| Cow position: | chr7:38188154-38188356 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 49, 129 |
| Conread position: | 17-363 |
| Cow position: | chr7:35920486-35920124 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 140 |
| Conread position: | 28-289 |
| Cow position: | chr7:19762875-19763151 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 28, 129 |
| Conread position: | 54-226 |
| Cow position: | chr7:42873002-42873172 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 109, 79 |
Show alignments to all cow chromosomes.